BAC Information

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BAC

Clone NameMSMg01-166M18
Chromosome4 (Build37)
Map Location 20,316,765 - 20,479,932
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166M18.T7 (MSMg01no166_m18.b1)MSMg01-166M18.TJ (MSMg01no166_m18.g1)
ACCAG364509AG364510
length757744
length of high quality
(start - end)		314 (45 - 358)668 (77 - 744)
definitionCHROMAT_FILE: MSMg01no166_m18.b1 PHD_FILE: MSMg01no166_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:24 2005CHROMAT_FILE: MSMg01no166_m18.g1 PHD_FILE: MSMg01no166_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,479,623 - 20,479,932)(20,316,765 - 20,317,432)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTTTTGGGCTTAGCCTATGATCTTGAATGATCAAAATTTCCCAG
TACAAATGAAGTACAATGAAAAGAATCTGTTTCCAAGTCTACAAGAGCAG
CATTGTTTCTGAAGTCTAGGGTGTCAGAGAGCAGAAGATGGCTGTAATTT
ACATTCCACTCCCATTACAACTCACTTCTCAGAGCCCATTTTAATGTCTT
CAATGACCAAATACCTAATACTCAATCAAATCATGGAATGGTGACTTGTT
GGTGGCATTTTTGGCCTATTCTTGTCCCCTTGTATCTGCTGCAATTTTTA
TGGCTGCCCTCTTTATGTCCCCCCCCCCCACTGTACTGTACATATTGTGT
GTCCTGATTTACCACAAATAGACCCATGGATGTAATTTCTGATCTATGAG
CAATAAAATGCAACAGTGGTTGCTTCCTTATCTCTAAACCCCAGAGCATC
CAAGTGCCAGGACAATATGTGGTCACTAAATTACTATGAAACACAAGCCA
CAAATCCAAAATAAACTGTCTGCCATGAAGAGAAATCTGACATTTCCAGG
AATTATTTTCTCTAATGATTTTCTCTCTTATTCATAAATACTATAGTACA
CGTTTTAATACTAGTCTTATTTAAATGGAGATACTTTTATACCTTTGCTT
TAATATCCTATCCATCAAAACTTATAGGGTGCGCACATGATCTATCTCTA
GTAAAGT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCACACAAATGGATTTTTAAT
AAAATCTTCAGTTATTTCCTAATGTGGATTGACTGGCCAGTTCCTTTTTC
TTGTCTTGTTTATTGGTTTCTTTATCTTCCCTGAACAGTCTTAGCTGGAG
GCAGCCTCAGAATTGCAGAACACCAGCACAGGCTTCCATTGAAAGTAAAA
AGGAAGGAAGAGGGTGGAGGGCTTCTGGGAAGAATGAGAATATCCCACAG
TATGGGGACTAGGGGACAGCTGGGCCTTGAAATCATAAAAGCATCAAAAA
TCAAAATCCCAAATTAAAAGTTGAAAATTACTCAGGTTTCAGAAACCTGT
CATTTAAAATGCAATTAAAGTCTGCAAAAGCCAGGTCCTAAGTTATGATA
CTCATTGTCTAAAGTTGCCAAAGAATTCCAACAGGATTCCATAATTCTGT
GCAACTGTTTTTCAATCCTTCAATTTTCTGAAGGTTTCTTGATACATAAA
ATAACAGCCATTGTTAAATTACACCGCAATAGTCTCCAGTTTAGAAGCCA
GTGTCAGTTTTCAAGGTTGACCACAGAGCTTCATGCTCAATGGGATTATC
TAAATTGAAAAACAGGGAGTTTAAAGGGAACTCTGTAGTGGCCATGGCCA
GAGAGGCAGGAGAGGCAGTGGTACTCAGGTCCTGTTGCTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_m18.b1 MSMg01no166_m18.b1 CHROMAT_FILE:
MSMg01no166_m18.b1 PHD_FILE: MSMg01no166_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:24 2005
         (314 letters)



>mm_chr4_20479419_20480132
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacttttgggcttagcctatgatcttgaatgatcaaaatttcccagtacaaatg 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 514 gaattcaacttttgggcttagcctatgatcttgaatggtcaaaatttcccagtacaaatg 455

                                                                       
Query: 65  aagtacaatgaaaagaatctgtttccaagtctacaagagcagcattgtttctgaagtcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aagtacaatgaaaagaatctgtttccaagtctacaagagcagcattgtttctgaagtcta 395

                                                                       
Query: 125 gggtgtcagagagcagaagatggctgtaatttacattccactcccattacaactcacttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gggtgtcagagagcagaagatggctgtaatttacattccactcccattacaactcacttc 335

                                                                       
Query: 185 tcagagcccattttaatgtcttcaatgaccaaatacctaatactcaatcaaatcatggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcagagcccattttaatgtcttcaatgaccaaatacctaatactcaatcaaatcatggaa 275

                                                                       
Query: 245 tggtgacttgttggtggcatttttggcctattcttgtccccttgtatctgctgcaatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tggtgacttgttggtggcatttttggcctattcttgtccccttgtatctgctgcaatttt 215

                     
Query: 305 tatggctgcc 314
           ||||||||||
Sbjct: 214 tatggctgcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_m18.g1 MSMg01no166_m18.g1 CHROMAT_FILE:
MSMg01no166_m18.g1 PHD_FILE: MSMg01no166_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:24 2005
         (668 letters)



>mm_chr4_20316565_20317632
          Length = 1068

 Score = 1292 bits (668), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcacacaaatggatttttaataaaatcttcagttatttcctaatgtggattgactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcacacaaatggatttttaataaaatcttcagttatttcctaatgtggattgactgg 260

                                                                       
Query: 61  ccagttcctttttcttgtcttgtttattggtttctttatcttccctgaacagtcttagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagttcctttttcttgtcttgtttattggtttctttatcttccctgaacagtcttagct 320

                                                                       
Query: 121 ggaggcagcctcagaattgcagaacaccagcacaggcttccattgaaagtaaaaaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggcagcctcagaattgcagaacaccagcacaggcttccattgaaagtaaaaaggaag 380

                                                                       
Query: 181 gaagagggtggagggcttctgggaagaatgagaatatcccacagtatggggactagggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagagggtggagggcttctgggaagaatgagaatatcccacagtatggggactagggga 440

                                                                       
Query: 241 cagctgggccttgaaatcataaaagcatcaaaaatcaaaatcccaaattaaaagttgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctgggccttgaaatcataaaagcatcaaaaatcaaaatcccaaattaaaagttgaaa 500

                                                                       
Query: 301 attactcaggtttcagaaacctgtcatttaaaatgcaattaaagtctgcaaaagccaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attactcaggtttcagaaacctgtcatttaaaatgcaattaaagtctgcaaaagccaggt 560

                                                                       
Query: 361 cctaagttatgatactcattgtctaaagttgccaaagaattccaacaggattccataatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaagttatgatactcattgtctaaagttgccaaagaattccaacaggattccataatt 620

                                                                       
Query: 421 ctgtgcaactgtttttcaatccttcaattttctgaaggtttcttgatacataaaataaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgcaactgtttttcaatccttcaattttctgaaggtttcttgatacataaaataaca 680

                                                                       
Query: 481 gccattgttaaattacaccgcaatagtctccagtttagaagccagtgtcagttttcaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccattgttaaattacaccgcaatagtctccagtttagaagccagtgtcagttttcaagg 740

                                                                       
Query: 541 ttgaccacagagcttcatgctcaatgggattatctaaattgaaaaacagggagtttaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgaccacagagcttcatgctcaatgggattatctaaattgaaaaacagggagtttaaag 800

                                                                       
Query: 601 ggaactctgtagtggccatggccagagaggcaggagaggcagtggtactcaggtcctgtt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaactctgtagtggccatggccagagaggcaggagaggcagtggtactcaggtcctgtt 860

                   
Query: 661 gcttttga 668
           ||||||||
Sbjct: 861 gcttttga 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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