TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGATAACAACCGGGATCAAAAAGGGCTCCACCTAAGATTCGCTT
AATCTTAGAAGCCAGGGTCAAGGGCTTCGTGCCCTTGCCATAGTTCCTAT
TTTAGTCTATTGTATAGTCTACCTTCCCCTTAGGCCATTGTAAATACATG
TGTTTGGGTGTAACTCAGCTATATTTTAGAAGCCAGGCGTGAGGTCTTTA
CTCTCTTAGGGCAAGGGCTTTCACACCCAAGTCATGGTTCTAACTAGGGC
GTTCTGTTCTAGCCAACCATCTCATGAATAATGCAATACTCTAAAACCAC
AGCCCGATCTACTTCCTAAACCATTGTAAATTCCTGTATATAGGTATAAC
TCAGCTATAATTCTAAGTATCTATTCTGGTTTCTCCTACAGTCAGAAACT
TCTTTCTTCCTTGGTGATGGTAGATTCCTGTGAAGGGCAGTGACCTAACT
TTTACTCAAAGAGATAGAATAATACCAGGGGCAGTACTGAATTCCAAGCC
CAAGGTCTTGCTCAAGGACGATCTAGGACTGTTGGAACACTGAGGCTTTA
GCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGATGATACTGA
AAGAGAGCATGTGGATCCATACACTAGACTAATGCGGGAATGGAGAATTA
AGAGAACGCCAGACTCCAGGAGGAGAGCTTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACTGGAGATCCTTAAAAGGA
TACATTTTTCTTTCTAGTTTAATACAGGCACACACTTGAGATGGCTGAAA
AGACTGGACAGTACAGACTCCTTCCAACCAACTGCTGATTATACTTAGCC
ACAGGGCTGCAAAGAAATCTTTAAGATATAGTTTTTGCTTTAGAACTTAT
CTTAGAAATATTCCTCAGTGCATACTAAAGTGAGATATGTATATGTCTGT
GTGTGTATGTATATGTGTGTGTGTGTATATATATATATATATATATATAT
ATATATATATATATATACACACACACACACACACATATATATATATATAT
ATATCTATCACATATACATATATATATATATATATAAAAAAAAATACAAA
AAACACTCTCTCTCTCTCTCTCGTTCTTATATATACAAATCTTTCTAAAA
AACTAATAAAATACCCTCCTTTCACCCTCCCCCCCGTGTGCGTGTGTGTG
TGTGTGTGAAAGAAAAATCTTTTATTTTTTTTTGTGTCGATACCGAGTGC
GAGCGGTATACACATACACATATATACATATATACATGCGCGCGCGTGTG
CGTGCCCGCCCCCCTCTTTCTTTCCTCTCTTTAGATATATACAACACAAA
TATCCTCTNCGCTTTTCCCCTCTCTCCCCCCCTTCTTT

Query= MSMg01no167_b05.g1 MSMg01no167_b05.g1 CHROMAT_FILE:
MSMg01no167_b05.g1 PHD_FILE: MSMg01no167_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:45 2005
         (280 letters)



>mm_chr4_24431942_24432622
          Length = 681

 Score =  480 bits (248), Expect = e-140
 Identities = 265/278 (95%), Gaps = 13/278 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcactggagatccttaaaaggataca-tttttctttctagtttaatacaggcacacac 59
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 409 tttcactggagatccttaaaaggatacattttttctttctagtttaatacaggcacacac 350

                                                                       
Query: 60  ttgagatggctgaaaagactggacagtacagactccttccaaccaactgctgattatact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttgagatggctgaaaagactggacagtacagactccttccaaccaactgctgattatact 290

                                                                       
Query: 120 tagccacagggctgcaaagaaatctttaagatatagtttttgctttagaacttatcttag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tagccacagggctgcaaagaaatctttaagatatagtttttgctttagaacttatcttag 230

                                                                       
Query: 180 aaatattcctcagtgcatactaaagtgagatatgtatatgtctgtgtgtgtatgtatatg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 229 aaatattcctcagtgcatactaaagtgagatatgtatatgtctgtgtgtgt--------- 179

                                                 
Query: 240 tgtgtgtgtgtatatatatatatatatatatatatata 277
              |||||||||||||||||||||||||||||||||||
Sbjct: 178 ---gtgtgtgtatatatatatatatatatatatatata 144



 Score = 54.9 bits (28), Expect = 6e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 250 tatatatatatatatatatatatatata 277
           ||||||||||||||||||||||||||||
Sbjct: 144 tatatatatatatatatatatatatata 171



 Score = 54.9 bits (28), Expect = 6e-12
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 252 tatatatatatatatatatatatatata 279
           ||||||||||||||||||||||||||||
Sbjct: 144 tatatatatatatatatatatatatata 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space:   182112
Effective search space used:   182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)