BAC Information

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BAC

Clone NameMSMg01-167B16
Chromosome4 (Build37)
Map Location 124,973,537 - 124,974,072
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167B16.T7 (MSMg01no167_b16.b1)MSMg01-167B16.TJ (MSMg01no167_b16.g1)
ACCAG364719
length750736
length of high quality
(start - end)
---536 (71 - 606)
definitionCHROMAT_FILE: MSMg01no167_b16.b1 PHD_FILE: MSMg01no167_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:47 2005CHROMAT_FILE: MSMg01no167_b16.g1 PHD_FILE: MSMg01no167_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAACGTGTCGCTGANNCNNNNN
TTATCAGACGAGTCATGACGGGCCGAANNNNNNNNNNNNNAAAAAATTTC
AGCCAGTTAGGTTTTGTGTTGGACAAGATATAACAAAGAAAAACGGNNNN
NNNNNNNNNNTNNNNNNNNAAGGGCCCGGCGTGAGGGTAGTTAAGGAATC
CANNNNNNNNNNNNNNNNNGTTTGTNTCCTCCCTTTATTCACTGTGACCA
ACTCGCCTGACCCTTTTCCCTAAAAGCGCCCGAAATTGTGCGTTAAATTN

CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCAGGAATTCTCCTATGGCTGTGAGGCCAGCAAGCAA
ACAAACGGGCGCCAAATGGATCCCAGCACCCCAGGGTCAGCTTGCTGCAG
TGGCTACACCTGCTTTGGCAGAGCAGTTGCTTTGAAGCTCAGCCTGCTGC
TGAGAGCACGTGTGGTACCGAGGGATGCGCTAGGAGGGTTTTAATGATGG
GAAATAGCTCCCTGTGTAATCTGGGTGCACTACAAGGGCTGCTGAGAGCC
TCTAAAAGCTTCCAGGGCTGGCCCACCTCGGAGGCTGCTCCATTATGTTG
TTTGTGGCCTCGGCTCCAGCTCTCCATCCTGATGCCTTCCCCAATTCCAG
GGTCCCACGTGGTGCTCCCACCTTGGGTCATTGGGTACAAGTCCCAGTAC
CCCCTCCCCCACCCCATGATTCTTATATAAATCAATTAGGATACATGAAC
TGAGCTGTGTGTGAGGCTCTGCTCTGTTGCATGCCTTCTGAACTATTCAT
CCTCCCAAGAAAAAAAATTAATTACAGCTGCCCCATACTAATGCTCTTCT
AATGGAATCTGATAGTTATGTTGGAGAGGAGCACGCGCCAGCGACTGGAA
TCTAGATGTTTGTTACAAGCATCCTAAAGCAGGGATGAAGGAGGTAAATA
ACCGCTGGACTGACCTGTTGATATGTACAAGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_b16.g1 MSMg01no167_b16.g1 CHROMAT_FILE:
MSMg01no167_b16.g1 PHD_FILE: MSMg01no167_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:47 2005
         (536 letters)



>mm_chr4_124973337_124974272
          Length = 936

 Score = 1006 bits (520), Expect = 0.0
 Identities = 532/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcctatggctgtgaggccagcaagcaaacaaacgggcgccaaatggatcccagcacc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 736 ttctcctatggctgtgaggccagcaagcaaacaaacgggcaccaaatggatcccagcacc 677

                                                                       
Query: 61  ccagggtcagcttgctgcagtggctacacctgctttggcagagcagttgctttgaagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccagggtcagcttgctgcagtggctacacctgctttggcagagcagttgctttgaagctc 617

                                                                       
Query: 121 agcctgctgctgagagcacgtgtggtaccgagggatgcgctaggagggttttaatgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agcctgctgctgagagcacgtgtggtaccgagggatgcgctaggagggttttaatgatgg 557

                                                                       
Query: 181 gaaatagctccctgtgtaatctgggtgcactacaagggctgctgagagcctctaaaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaaatagctccctgtgtaatctgggtgcactacaagggctgctgagagcctctaaaagct 497

                                                                       
Query: 241 tccagggctggcccacctcggaggctgctccattatgttgtttgtggcctcggctccagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccagggctggcccacctcggaggctgctccattatgttgtttgtggcctcggctccagc 437

                                                                       
Query: 301 tctccatcctgatgccttccccaattccagggtcccacgtggtgctcccaccttgggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctccatcctgatgccttccccaattccagggtcccacgtggtgctcccaccttgggtca 377

                                                                       
Query: 361 ttgggtacaagtcccagtaccccctcccccaccccatgattcttatataaatcaattagg 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 376 gtgggtacaagtcccagtaccccctcccccaccccatgattcttatataaatcaactagg 317

                                                                       
Query: 421 atacatgaactgagctgtgtgtgaggctctgctctgttgcatgccttctgaactattcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atacatgaactgagctgtgtgtgaggctctgctctgttgcatgccttctgaactattcat 257

                                                                   
Query: 481 cctcccaagaaaaaaaattaattacagctgccccatactaatgctcttctaatgga 536
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 256 cctcccaagaaaaaaaattaattacagctgccccatgctaatgctcttctaatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)