Query= MSMg01no167_g10.b1 MSMg01no167_g10.b1 CHROMAT_FILE:
MSMg01no167_g10.b1 PHD_FILE: MSMg01no167_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:09 2005
(609 letters)
>mm_chr4_83027247_83028257
Length = 1011
Score = 986 bits (510), Expect = 0.0
Identities = 573/604 (94%), Gaps = 18/604 (2%)
Strand = Plus / Plus
Query: 8 gaattcaattcctgcaccccacagtggaaggaaaaaaacatcttcagagagttcctctga 67
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 224 gaattcaattcctgaagcccacagtggaaggaaaaaaacagcttcagagagttcctctga 283
Query: 68 catccacacatgttccatggcatgagtttacctatgcacacacacacacacacacacacc 127
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catccacacatgttccatggcatgagtttacctatgcacacacacacac----------- 332
Query: 128 accaccaccaccaccaccaccaccaccaccacatacctcctcctcctcctcctccaccac 187
||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 333 --caccaccaccaccaccaccaccaccaccacatacctcctcctcctccacc---accac 387
Query: 188 catcaacaacaataacaaaaaaaaa--ttaaggaatatttctaaaataaaacattgtgac 245
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 catcaacaacaataacaaaaaaaaaaattaaggaatatttctaaaataaaacattgtgac 447
Query: 246 ccagcaaaaggattctctcagaacatctggtcaatgatcacattggcttggctggtgtgt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 448 ccagcaaaaggattctctcagaacatctggtcaatgatcacattggcttggctcgtgtgt 507
Query: 306 cttctaaggaagaattcaagtctttccctgcttcaggtaagtacgcccaggtgtggcaga 365
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 508 cttctaaggaagaattcaagtctttccctgcttcaggtaagtacgtccaggtgtggcaga 567
Query: 366 gcatggccgaaagccagaatgggtatattgtagaggaggctggaattgaaaggcttgttc 425
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcatggttgaaagccagaatgggtatattgtagaggaggctggaattgaaaggcttgttc 627
Query: 426 ttggttagttggaaactctacaatgctgtgacagggaaagggatcttgtaccagctggca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttggttagttggaaactctacaatgctgtgacagggaaagggatcttgtaccagctggca 687
Query: 486 aaattgatgattatattggacagtttcatgtcaacttgacacaagctaaggtcatccacg 545
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 688 aaattgatgattatgttggacagtttcatgtcaacttgacacaagctaaggccatccagg 747
Query: 546 aggatgaacttcaactaagaatatgcctctagctataggcaagcctaaaaggcatttttt 605
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 748 aggatgaacttcaactaagaaaatgcctctagctataggcaagcctaaaaggcattttct 807
Query: 606 taat 609
||||
Sbjct: 808 taat 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1011
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1001
Effective search space: 599599
Effective search space used: 599599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_g10.g1 MSMg01no167_g10.g1 CHROMAT_FILE:
MSMg01no167_g10.g1 PHD_FILE: MSMg01no167_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:09 2005
(488 letters)
>mm_chr4_83205610_83206497
Length = 888
Score = 890 bits (460), Expect = 0.0
Identities = 481/488 (98%)
Strand = Plus / Minus
Query: 1 acatctggtatttgaaatttgttaaaagatcatagctagaaaggacacaggcactagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 acatctggtatttgaaatttgttaaaagatcatagctagaaaggacacaggcactagtgt 713
Query: 61 agaggatacagctgtgatatggctaaaagcacatgatgtgcctgtcaaatcaccttctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 agaggatacagctgtgatatggctaaaagcacatgatgtgcctgtcaaatcaccttctat 653
Query: 121 aaaggacacctgaagtcatgaaagaggatagacagctaattattttctagtttaactctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aaaggacacctgaagtcatgaaagaggatagacagctaattattttctagtttaactctg 593
Query: 181 tcatagattttccaaggcactgtgtgtgttgctttgtgtgcatgtgtgcaaaagcatgta 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcatagattttccaaggcactatgtgtgttgctttgtgtgcatgtgtgcaaaagcatgta 533
Query: 241 aaaacataacttacagtgaaagtgtaaaatctaatatgaagtagcacagctttagaatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaaacataacttacagtgaaagtgtaaaatctaatatgaagtagcacagctttagaatag 473
Query: 301 ctattctaactctatgtgagttcattgaggtatataacccccaggtctgactaagctcaa 360
|||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||
Sbjct: 472 ctattctaactctatgtgagtttattgaggtatataagctttaggtctgactaagctcaa 413
Query: 361 tgagggatttttttcatatttgcaagttctttacaatgaagttttaataatcaaaaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgagggatttttttcatatttgcaagttctttacaatgaagttttaataatcaaaaattt 353
Query: 421 ttaccttctaaacatttatgtgtatagctgagtgtagtggtagtgcacacctttaatctc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 352 ttaccttctaaacatttatgtgtatagctgagtgtagtggtagtgcacacctttaatccc 293
Query: 481 agcactta 488
||||||||
Sbjct: 292 agcactta 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
