Query= MSMg01no167_g15.b1 MSMg01no167_g15.b1 CHROMAT_FILE:
MSMg01no167_g15.b1 PHD_FILE: MSMg01no167_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:10 2005
(626 letters)
>mm_chr4_15560665_15561690
Length = 1026
Score = 977 bits (505), Expect = 0.0
Identities = 601/641 (93%), Gaps = 15/641 (2%)
Strand = Plus / Plus
Query: 1 tgagaccgggatccctgtgcataatgactaaatatttatttaaatgaataaaaatgctgg 60
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgagaccgggctccctctgcatgatgactaaatatttatttaaatgaataaaaatgctgg 245
Query: 61 atttttatttgagctgtccattgccacccttcatgtatgagttttgttgaattgttctat 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 atttttatttgagttgtccattgccacccttcatgtatgagttttgttgaattgttctgt 305
Query: 121 agtagatttttagtatacatctccaaaattttgataaaacaacatgctaaaattatatag 180
||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct: 306 agtagatttttggtatacatccccaaaattttgataaaacgacatgctaaaattatacag 365
Query: 181 tttttccgtaccatgatttctaaagtggaacatgaacaatcccatatgttcataaattca 240
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 366 tttttctgtaccatgatttctaaagtggaacatgaacaatcccatatgttaataaattca 425
Query: 241 accaatcatagcatttgctattttacccccactatcaattccataggaagatgtttgtaa 300
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgaatcatagcatttgctgttttacccccactatcaattccataggaagatgtttgtaa 485
Query: 301 ttcaagctgacaatgagggatggttcctacctg-gtttctcctgttttacctcttgaaat 359
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 486 ttcaagctgacaatgagggatggttcctacctgtgtttctcctgttttagctcttgatat 545
Query: 360 acctcccttttttaatagccagctatatattgagaaagccaagttggttctaccttagcc 419
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 accttccttttttaatagccagctatatattgagaaagccaagtcggttctaccttagcc 605
Query: 420 -c-------------gcccctcacaactatcaccacttcaaagacatatcaaaaagcaag 465
| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 606 gctaccaataaccctgcccctcacaactatcaccacttaaaagacatatcaaaaagcaag 665
Query: 466 aattcagtaatcatattgagtacatagagaacttacactcatgttttggcttctagtttg 525
|||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct: 666 aattcagtaatcatattgagtacacagagaacttgcactcatgttttggcttttagtttg 725
Query: 526 tttgatgaaatctctaatggaggctaaagttaagtaaatctgttcaaacaacttcaggca 585
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 726 tttgatgaaatctctaatggaggccaaagttatgtaaatctgttcaaacaacttcaggca 785
Query: 586 attttaagtcccagcttctgatacacaaaatggttgatgat 626
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 786 attttaagtcccagcttctgatacacaaaatggtcgatgat 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_g15.g1 MSMg01no167_g15.g1 CHROMAT_FILE:
MSMg01no167_g15.g1 PHD_FILE: MSMg01no167_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:10 2005
(645 letters)
>mm_chr4_15671070_15672114
Length = 1045
Score = 1239 bits (641), Expect = 0.0
Identities = 644/645 (99%)
Strand = Plus / Minus
Query: 1 cattggctgataaacagagcttagggcctatggaggaaggaattgtactaagcgtaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cattggctgataaacagagcttagggcctatggaggaaggaattgtactaagcgtaagga 786
Query: 61 taaattctattgatgtaggatacagaacacatggaagtggcttctttttcacaagaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 taaattctattgatgtaggatacagaacacatggaagtggcttctttttcacaagaatgg 726
Query: 121 gctctattcactgaaagattaaactcaccataagggtctacataaacaatattcaggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gctctattcactgaaagattaaactcaccataagggtctacataaacaatattcaggatt 666
Query: 181 ttggagcacttgaaaaatcccactttaagataatttctctgtcatattttaatattgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttggagcacttgaaaaatcccactttaagataatttctctgtcatattttaatattgata 606
Query: 241 gaaggctaactcaaagagtaagaacattaaaagaggagaaagaattgagagagaaaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaaggctaactcaaagagtaagaacattaaaagaggagaaagaattgagagagaaaacca 546
Query: 301 gggaggaaaaaatcacatttacattattcttttgatattattcatttttggtagttagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gggaggaaaaaatcacatttacattattcttttgatattattcatttttggtagttagtc 486
Query: 361 ttttatggtgtattaccataggaaacacactacatcctaggcacagggatcattagcatc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttttatggtgtattaccataggaaacacactacatcctaggcacagggatcattagcatt 426
Query: 421 agttgttgagggttgttgaatgtattcctcaaggataaagttttctttcaggttcacaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agttgttgagggttgttgaatgtattcctcaaggataaagttttctttcaggttcacaga 366
Query: 481 attctcattgtgttcaggcaatggcaacaactatagatggtttagttgtagtccttattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attctcattgtgttcaggcaatggcaacaactatagatggtttagttgtagtccttattc 306
Query: 541 taacattatttttcccttttgactttgtgttcctttttctatgcagtgaaataacgttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taacattatttttcccttttgactttgtgttcctttttctatgcagtgaaataacgttta 246
Query: 601 aacataaagcctctgataaatatatacaatcaaaagtggataaaa 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aacataaagcctctgataaatatatacaatcaaaagtggataaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
