Query= MSMg01no168_j20.b1 MSMg01no168_j20.b1 CHROMAT_FILE:
MSMg01no168_j20.b1 PHD_FILE: MSMg01no168_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:58 2005
(309 letters)
>mm_chr4_76851076_76851784
Length = 709
Score = 565 bits (292), Expect = e-165
Identities = 298/300 (99%), Gaps = 1/300 (0%)
Strand = Plus / Plus
Query: 8 aggaggaaaagcaatattntgggaagtaaataaataaaataattaactaataaaaaacaa 67
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aggagggaaagcaatatt-tgggaagtaaataaataaaataattaactaataaaaaacaa 267
Query: 68 aaaggggaataaatgtcaggcatggcaaaatataatgaatgtagttgagcaatccaattt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaggggaataaatgtcaggcatggcaaaatataatgaatgtagttgagcaatccaattt 327
Query: 128 aactgaaaaattgatattacatgatctaataaattgaatttttatttgtttaaaaaatgg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aactgaaaaattgatattacatgatctaataaattgaatttttatttgtttaaaaaatgg 387
Query: 188 ggaagctcagtggattatctttgattgcttgtttttaaataataagtaaataagtacatt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggaagctcagtggattatctttgattgcttgtttttaaataataagtaaataagtacatt 447
Query: 248 gtctacttattttataaatattatttaatatttaataattctaataatagatattaaata 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtctacttattttataaatattatttaatatttaataattctaataatagatattaaata 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_j20.g1 MSMg01no168_j20.g1 CHROMAT_FILE:
MSMg01no168_j20.g1 PHD_FILE: MSMg01no168_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:58 2005
(238 letters)
>mm_chr4_76934687_76935324
Length = 638
Score = 414 bits (214), Expect = e-120
Identities = 232/238 (97%)
Strand = Plus / Minus
Query: 1 tttgaatatattgttttttcaaattctatgtattaagattcatttaagttgttcctcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgaatatattgttttttcaaattctatgtattaagattcatttaagttgttcctcttg 379
Query: 61 ggaaccattactatggggctattgagctttacagggaactcattgccttgtttctctcat 120
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggaaccattactgtagggctattgagctttacagggaactcattgccttgtttctctcat 319
Query: 121 actgcttgtaatttttgtaattggatctgtatattggaatttttgtttgagtatgagtcg 180
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 318 actgtttgtaatttttgtaattggatctgtagattggaatttttgtttgagtatgaatcg 259
Query: 181 ctagccaatctacattgaggaggaattgctctctttgttattattctaacagggatgc 238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 258 ctagccaatctacattgaggaggaattgctctctttgttattattctaactgggatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
