BAC Information

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BAC

Clone NameMSMg01-168L04
Chromosome4 (Build37)
Map Location 23,868,455 - 23,868,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873
Downstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L04.T7 (MSMg01no168_l04.b1)MSMg01-168L04.TJ (MSMg01no168_l04.g1)
ACCAG365795AG365796
length719758
length of high quality
(start - end)
311 (46 - 356)295 (80 - 374)
definitionCHROMAT_FILE: MSMg01no168_l04.b1 PHD_FILE: MSMg01no168_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:07 2005CHROMAT_FILE: MSMg01no168_l04.g1 PHD_FILE: MSMg01no168_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATTATTTTCACCGCCCCTGCCTTTATGTGAAGTTCTTTGAT
CCATTTAGATTTGACCTTAGTACAAAGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACGAGTACCATGCAGNTTTTACCACAATTGTT
CTGTACCAAATCTTTAGCTCCAGCATGGTGATTCCCCCCGAAGTTCTTTT
ATTTTGAGAACAGTTTTTG
TAGCGAATATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTTATTATTTATTAAA
AATAGTCTTGAAATAAGTTTGGTTTCATTAGCAATGAGGCCTTATAAAGC
TTTGTGAATTCAAAGCCAGAGTGATCTACACCCCTATGTATCTGGCCAAT
CAGAATTGCGTGGCAAAACTGTCTCAAAAGAGGGAGAGTTATCCCTATTG
TTATTAGTTTCTATTTTTTCTCCGCAGAGGTTTTGTACTTTTTTTTTTTG
GTCAAATTTGAACTTTCTTCATTTATAACTACCAAAAGTAACCTGTGAAT
TCTAATACTATCTTATTTTTTTACACCCCCCCCCTCTTTAACAGTGTCAA
ATAATTCTGATTAGGTTTTTTAAAGTATTTTTTATATTTTAACAAAGTTA
ATAATTAGATGATGGGCTCTGATGTCATCCTAATTGATATCTGTATAAAC
ACACTCAGAGAGATTTTACAATTTACTTATAGTGTTTTTCCTTTAACCTT
AATCAGGTCCCCCCAGGTTCTCAAAAAACAATTTAAACCCTTTTGATGAA
AAAAGCTTAATCTTTTTAAAGGAATACCCTCCGCAAACCAAGTACACGGG
AAACCACTCATTTTTGGTATAACTCTTACAGGGGCACACAGGGCAACCGG
AATTCATCTCCCTAACCCTTTCTACCACTCACTCACCTTGCCAACAGTCT
TAGTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l04.g1 MSMg01no168_l04.g1 CHROMAT_FILE:
MSMg01no168_l04.g1 PHD_FILE: MSMg01no168_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:07 2005
         (295 letters)



>mm_chr4_23868110_23868806
          Length = 697

 Score =  524 bits (271), Expect = e-153
 Identities = 288/297 (96%), Gaps = 8/297 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgattttattatttattaaaaatagtcttgaaataagtttggtttcattagcaatgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctgattttattatttattaaaaatagtcttgaaataagtttggtttcattagcaatgagg 581

                                                                       
Query: 61  ccttataaagctttgtgaattcaaagccagagtgatctacacccctatgtatctggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccttataaagctttgtgaattcaaagccagagtgatctacacccctatgtatctggccaa 521

                                                                       
Query: 121 tcagaattgcgtggcaaaactgtctcaaaagagggagagttatccctattgttattagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcagaattgcgtggcaaaactgtctcaaaagagggagagttatccctattgttattagtt 461

                                                                       
Query: 181 tctattttttctccgcagaggttttgtac----tttttttttttggtcaaatttgaactt 236
           |||||||||||||||||||||||||||||    |||||||||  ||||||||||||||||
Sbjct: 460 tctattttttctccgcagaggttttgtacttttttttttttt--ggtcaaatttgaactt 403

                                                                    
Query: 237 tcttcatttataactaccaaaagtaacctgtgaattctaatactatctta--ttttt 291
           |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||
Sbjct: 402 tcttcatttataactaccaaaagtaacctgtgaattctaatattatcttaacttttt 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 697
Length adjustment: 9
Effective length of query: 286
Effective length of database: 688
Effective search space:   196768
Effective search space used:   196768
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)