BAC Information

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BAC

Clone NameMSMg01-168P02
Chromosome4 (Build37)
Map Location 23,655,965 - 23,656,209
singlet/doubletsinglet
Overlap genenone
Upstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464
Downstream geneLOC623873, LOC664973, F730047E07Rik, Klhl32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168P02.T7 (MSMg01no168_p02.b1)MSMg01-168P02.TJ (MSMg01no168_p02.g1)
ACCAG365970AG365971
length785715
length of high quality
(start - end)
199 (45 - 243)248 (52 - 299)
definitionCHROMAT_FILE: MSMg01no168_p02.b1 PHD_FILE: MSMg01no168_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:31 2005CHROMAT_FILE: MSMg01no168_p02.g1 PHD_FILE: MSMg01no168_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTTTGATGTACTTAGTGACTAATGCCTTCTCAGACCTTATATTG
TGAAGTTATAGAGACTGTATATATACATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATAGAGAG
AGAGAGAGAGTGAGAGTGTGTGTGTGTGTGAGTGTGTGTGTGAGCGCGTG
TGTGCGGGAGAGGGTGTTTTTGGGGGGCGGGGGGGGGGGCGAGAGCGCGC
GAGATTTTTGTATTTCCCCCCCCCCCCCCCCCGGGGGAGAGGGTTNGGGG
GGNNNNNGGGGGGNAACCAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGG
GGGCCTTTTTCCTCTTTCCCTTCTAGGGTGTGTTTTTTGTGTGCGGGTGG
GGCGAGGGGATGTGGGAGGTGGGCGGCCCTCGCTTGTTCGTTTTCCGTGG
TTTGCCTCGTAGTGGGTGTATTGTGGTGGGAGCGCTCGGGTTGGGTGGTG
GTTTGCCCTCGCGGCGTGACTTTACCTCGGCGCCCACGTGTCCAGCACGT
TTCCTTGGTCGCCCTTTTTGCCCGCCGCGTGTTGTGCGCGCGCTCGGGCC
GTTGCGTGCGCTGTGGCGGCCGCCCCGGTTACCCCGGCCTCCCGTGGTTT
TTTTGTGCCCCTTGTTTTGTGTCCCTTCTTATTTN
TGGCGGCCGCCTGGTACTGTATTAGAGGTNGAACTATAGAATTTTCCGAG
AAATTCTTTATCTGAATTATGCTGGAGCTGGAGCTGGATCCAGTTGTTTA
ACCCATGATTGTGTTATATGTAGCATAAGTGCACTATCTGTGCACACGCT
GTATCATATGGATGAGAAATTTTAGAGGCCTTAAAGAAGAGGTACCTTTT
AAAAACACAGGTCCTGGGCAGCAAAACATATGCTTAATTTTGTGAAATAA
AATTAGGCTGGTTTTGTGAGCAATCAGCCTAATGTACTTGGAATTATTTT
TCTTTGGATATTTTAGCCTGGCTGCTTTTTTCCTTTTTTTTTTGTTTACC
NTTACCTNCCCCTAAATTTGGATGTCNATACTTAAAGTTGTTTGCCAAAT
AAAAAAAAAAAAAAACCATTTCTCGTATCACAAAACTGTCCTGTACCCTA
AGGCTTCTACCTGGCTTCACCTAGAGAATTACACAGGTAAACAATCCTGC
CACTCAGATTGCTCCATTGCGGAAATGGTTCTCCTACTTAGATTTCTTCG
CTGAGGAAGTGGTCCCCTGACCTAGAGATTTCCATCAGAAACATTATGTC
CCTTAAGTGAAGGCCAGCTACCACACAGTATTTGCTTATAATTACAGCGC
ACTTGGTGCACATTTGTTCTAAAGACTTTTAAATAATTGTTTTCCTTTCT
AAACTTCTGTTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_p02.g1 MSMg01no168_p02.g1 CHROMAT_FILE:
MSMg01no168_p02.g1 PHD_FILE: MSMg01no168_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:31 2005
         (248 letters)



>mm_chr4_23655765_23656412
          Length = 648

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctttatctgaattatgctggagctggagctggatccagttgtttaacccatgattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 445 aattctttatctgaattatgctggagctggagctggatccagttgtttaaatcatgattg 386

                                                                       
Query: 61  tgttatatgtagcataagtgcactatctgtgcacacgctgtatcatatggatgagaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttatatgtagcataagtgcactatctgtgcacacgctgtatcatatggatgagaaatt 326

                                                                       
Query: 121 ttagaggccttaaagaagaggtaccttttaaaaacacaggtcctgggcagcaaaacatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagaggccttaaagaagaggtaccttttaaaaacacaggtcctgggcagcaaaacatat 266

                                                                       
Query: 181 gcttaattttgtgaaataaaattaggctggttttgtgagcaatcagcctaatgtacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttaattttgtgaaataaaattaggctggttttgtgagcaatcagcctaatgtacttgg 206

                
Query: 241 aatta 245
           |||||
Sbjct: 205 aatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)