BAC Information

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BAC

Clone NameMSMg01-169D05
Chromosome4 (Build37)
Map Location 51,763,640 - 51,763,957
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169D05.T7 (MSMg01no169_d05.b1)MSMg01-169D05.TJ (MSMg01no169_d05.g1)
ACCAG366143AG366144
length774710
length of high quality
(start - end)
327 (101 - 427)227 (124 - 350)
definitionCHROMAT_FILE: MSMg01no169_d05.b1 PHD_FILE: MSMg01no169_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:50 2005CHROMAT_FILE: MSMg01no169_d05.g1 PHD_FILE: MSMg01no169_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTTCTTTTTCTTCCCCCCCCTCCCTTTACTCACTCTTACCCCCNTN
NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCTGTAAACAAGCTTTTGTAATTCTTGAGTGTATATAAG
TCATTACTGGAGACAAAGATGGTGTTCAGCAATGCTGAGTGTTCCATATC
CGAGAACAGGTGCTCCAGTAGAGAAGCTCGCTGTCTTAGTTAACATTTGC
ACCAGCTGCATGCACCTTTGCTAGAACTGCCCCTCTATGAAACCTAGCCT
GCTTTTCTACCTTACCTTTCAGACATGACACATAATGTTACTCTTCAATA
TTTTATTATTGAGCTTGCAAAATATCAGAGTGCCACAGGGTAATTCTATT
AATTTCCTGCTAATTTATTTTCCCCCCCCCCCCCTCTATAACTTTTGATA
AATTTTTAGGGTTGGAGGTTGGCTAGATGTCTTCCTTTAGAAACAATATT
TCACAACGGAGCCCATGATAGACTACTATTCATCTTTCTCCTGTTCTGCT
ATTCCAAATACTGGCATCACGGTATCACATTTCACCTTATTACCTCTTTT
TTTATATTAAATACCATGAATTTTACGCCTTTAACTTTTACAAACAGGCG
TCACTGTGCTTCTCTGTCTTCTGTCGTTATTCATCGCCGCATCTGATCCC
CCCCTGATTTTTGCTCTTGATGCAGAAAATTTTCCATGTATTATGTGCTC
CTTTCGCCCTTTTACTATTTTGAT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATACATAGGGAAGAGTGAGCTTGG
TAAATACAGAACCATAAATGCTTTTAAATAATTCCCAATATTATGATATT
AAACTTTTTTTTTTTTTGTCTGATTTTTTTTTTCCTTTCCATTTTTTATT
AGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATA
CCCACCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGG
CGTTCCCCTGTTCTGTTTTTTATAAAGTTTGTGTGTCCAATGGGCCTCCC
TTTCTTGATAAGTTCCCCTAGCCCANCCTCTGATACATATGCAGCTAGAG
TCAAGAGCTCCGGGGAACAGAAAAAAAAAAAATGTTGATCCGCCTATAGG
GTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGG
GAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCAGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGTTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGTTTTTCCCCACTTTCTC
CTCTATAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_d05.b1 MSMg01no169_d05.b1 CHROMAT_FILE:
MSMg01no169_d05.b1 PHD_FILE: MSMg01no169_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:50 2005
         (327 letters)



>mm_chr4_51763436_51764162
          Length = 727

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgtaaacaagcttttgtaattcttgagtgtatataagtcattactggagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcctctgtaaacaagcttttgtaattcttgagtgtatataagtcattactggagac 463

                                                                       
Query: 65  aaagatggtgttcagcaatgctgagtgttccatatccgagaacaggtgctccagtagaga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 462 aaagatggtgttcagcaatgctgagtgttccatatccgagaacaggtgctccaggagaga 403

                                                                       
Query: 125 agctcgctgtcttagttaacatttgcaccagctgcatgcacctttgctagaactgcccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agctcgctgtcttagttaacatttgcaccagctgcatgcacctttgctagaactgcccct 343

                                                                       
Query: 185 ctatgaaacctagcctgcttttctaccttacctttcagacatgacacataatgttactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctatgaaacctagcctgcttttctaccttacctttcagacatgacacataatgttactct 283

                                                                       
Query: 245 tcaatattttattattgagcttgcaaaatatcagagtgccacagggtaattctattaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcaatattttattattgagcttgcaaaatatcagagtgccacagggtaattctattaatt 223

                             
Query: 305 tcctgctaatttattttc 322
           ||||||||||||||||||
Sbjct: 222 tcctgctaatttattttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)