BAC Information

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BAC

Clone NameMSMg01-169E23
Chromosome4 (Build37)
Map Location 61,900,072 - 61,900,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37
Downstream geneSlc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169E23.T7 (MSMg01no169_e23.b1)MSMg01-169E23.TJ (MSMg01no169_e23.g1)
ACCAG366218AG366219
length700689
length of high quality
(start - end)
309 (45 - 353)218 (128 - 345)
definitionCHROMAT_FILE: MSMg01no169_e23.b1 PHD_FILE: MSMg01no169_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:58 2005CHROMAT_FILE: MSMg01no169_e23.g1 PHD_FILE: MSMg01no169_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTACAGTTGAACGGTGCCTCAGGTTGGCTTTAAATTCATGGTA
ACCTTGACAGTTCAGCTGCCAAGGGCTAGGGTTACAGGTGAAACCTTCTA
CCAATGACATCAGCGTGCCTTCCTAACATACATGCCATCTTATAAATGTG
CGGTGTGTATGAGGATATTCCAAGGAAACCCACAGAAGGCTCAGTTACAT
GGTTCTGAAACACACAGGGCAAGCGGGAACACCAGGGCATCCAGAGAGAG
CCAGTGGACACCAAAGGCTATCCGCATGAGGGCACAGCGAGGCTGGCAAC
AAATTAAGTGGTTTTCCCGGAGCAAGCCTCATGGAACAAGGGTGCACCAC
AGAAAACAGTCATGATTACTAAAATATAAGAGGCACTAGGGGCCTCAGAG
GACAAGGTACACAGGCAAATGTCAATACTCAGCATAAAGTTGGACCCTCA
AGGATATTGCTGGAGTTCAGCTTAACTCCCCCCATACACATCCAAACCCT
CATCTGAGTCAAATGGAGGAAACCTTGGGCTTTAATATCTTCCCTTTCTA
GGTCAAGTGACAAGAAAAACAATCCTTGAACTAACTTGGGCTTAGACTAA
CTCTGCAACTTGAAAGCTGTGGTTCTGGCAAAGGCCCCATCCTACCAGGA

CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGAGGCAAATACTTGATATG
CTTTATTTCAACTTTGCTTTAGCTTCATATGGTATGTCCTATTTTATTCT
TCTTACCATAGTATTAGTTAAGACTCAGAAATAATAAGTAGCTGTAAGGT
CATATAGTCAATCGGAGTGAGAACTTAGAATTAAGCCCAAGGCTCTCTAA
CTCAGGAGCCTTTGTTCTTATTGACTCCACTACACTGGTCGGGATGTTTT
TACCATGAAAGAGGAATGGTTAAATAGGAAAAAGAGGAATAAACAGTGCT
GTAGAACTCCATATTTGTTGCACCGCCCCCGCCCCACGCAAAAAAATTGC
ACATGGGTTTGTTTAAAATATGGAGGAGTATATGAAGACTGATACGGAGT
GAGGCGTGACAACTGACACTCAATTGGTTTAAAAGCATTTGGAGGATGCT
CTTCTAGGGGATTATCATATTCTTCCCTGCTTTTACTTTTCCTCATCCTC
TTTTGCCTCCTACTCCTCTTTCTCTTCTTCGGACCCTCGTATATTTTTGG
TTGATTATGGTGTGTGAACACATGAGCAAATTGGTGAGCCTTTGCTAGTG
TATTCAGAATTCGGAACAGTACACCAGTTGATGGGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_e23.b1 MSMg01no169_e23.b1 CHROMAT_FILE:
MSMg01no169_e23.b1 PHD_FILE: MSMg01no169_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:58 2005
         (309 letters)



>mm_chr4_61899771_61900479
          Length = 709

 Score =  551 bits (285), Expect = e-161
 Identities = 300/305 (98%), Gaps = 2/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttttacagttgaacggtgcctcaggttggctttaaattcatggtaaccttga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaattctttttacagttgaacggtgcctcaggttggctttaaattcatggtaaccttga 546

                                                                       
Query: 64  cagttcagctgccaagggctagggttacaggtgaaaccttctaccaatgacatcagcgtg 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 545 cagttcagctgccaagggctagggttacaggtgaaaccttctaccaatgacatcagtgtg 486

                                                                       
Query: 124 ccttcctaacatacatgccatcttataaatgtgcggtgtgtatgaggatattccaaggaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 485 ccttcctaacatacatgccatcttataaatgtgcggtgtgtatgaggatattccgaggaa 426

                                                                       
Query: 184 acccacagaaggctcagttacatggttctgaaacacacagggcaagcgggaacaccaggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acccacagaaggctcagttacatggttctgaaacacacagggcaagcgggaacaccaggg 366

                                                                       
Query: 244 catccagagagagccagtggacaccaaaggctat-ccgcatgagggcacagcgaggctgg 302
           ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 365 catccagagagagccagtggacaccaaaggc-atcccgcatgagggcacggcgaggctgg 307

                
Query: 303 caaca 307
           |||||
Sbjct: 306 caaca 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)