BAC Information

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BAC

Clone NameMSMg01-169P11
Chromosome4 (Build37)
Map Location 118,350,376 - 118,350,497
singlet/doubletsinglet
Overlap genenone
Upstream geneDmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1
Downstream geneOlfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P11.T7 (MSMg01no169_p11.b1)MSMg01-169P11.TJ (MSMg01no169_p11.g1)
ACCAG366679AG366680
length722739
length of high quality
(start - end)
678 (45 - 722)233 (128 - 360)
definitionCHROMAT_FILE: MSMg01no169_p11.b1 PHD_FILE: MSMg01no169_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:48 2005CHROMAT_FILE: MSMg01no169_p11.g1 PHD_FILE: MSMg01no169_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAACTCACCTAAAGAAATACAGGAGAACACTGCTAAAGAGTTAC
AAGTCCTTAAAGAAAAACAGGCAAAACACTGCTAAAGAGTTACAAGTCCT
TAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAA
AACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTA
GACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGAC
GCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCA
TCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGAC
TCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAA
GATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAA
ACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGA
CCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAA
GAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGAC
TGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAAT
GCACTAAATAAAGATAGAATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCACGGTGATCTGGCTGAATT
CCTGCATTGCAATCTTTCTCTGTCTGAAGAGATTTCAGACACGTGATTCT
CAAAGCGTATCAGGGGTGTGCAGGGCGTTTGTGTACCCATTGTCCATTTA
CACTGAGAGCCCCAGGAGGCTTCGGATTGGCAAGTGGGGGTACTGAGGAG
TAGTTCTCATTTGATACTGAGATTTGGGCAGGGCTTTACTGGTACAAATG
GCAGGAGCAGTCCAGGCTAGTCCTATAATGTGCTTTCCATTCTGGTCTGT
GCCTAGGATCTATTTACTTCTCCTACCACCACAGCCCCATGTCCCTCCGC
TACTCTCCCTACTTTCCATTTTGTCTCAAAACTACAGAGGTTGCTAGGTC
TTACATGGATAAAGAGTAGGATCAGGGTTGGTACTTTCTGTGATTTCAGT
TAAAGGTTTTTGGTTTTGTTTTTAAAAATCATCCTTAGGATTTAAAAGGT
TGTGTGTGTGTGTGTGNGTGTCGTGAGCTCTTTTCCTTCCCCCCTTTTTT
TTCTTTGCGGTCCGTTCTTCTTTTCTCGTCCCTACTTTCTGTTTACTTTT
TGCTTTTTTCCGTATTCACTTGTGTCACAATATATTTTTTATTTTAGATG
ATCTTAGCTCCTTTCTCCGTGCTCTGTTTCTGGTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p11.g1 MSMg01no169_p11.g1 CHROMAT_FILE:
MSMg01no169_p11.g1 PHD_FILE: MSMg01no169_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:48 2005
         (233 letters)



>mm_chr4_118350062_118350697
          Length = 636

 Score =  197 bits (102), Expect = 4e-55
 Identities = 116/122 (95%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                       
Query: 115 actgaggagtagttctcatttgatactgagatttgggcagggctttactggtacaaatgg 174
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 315 actgaggagtagttctcatttgatactgagatttggccagggctttactggtacgaatgg 374

                                                                       
Query: 175 caggagcagtcc---aggctagtcctataatgtgctttccattctggtctgtgcctagga 231
           ||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 375 caggagcagtcctataggctagccctataatgtgctttccattctggtctgtgcctagga 434

             
Query: 232 tc 233
           ||
Sbjct: 435 tc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 636
Length adjustment: 9
Effective length of query: 224
Effective length of database: 627
Effective search space:   140448
Effective search space used:   140448
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)