BAC Information

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BAC

Clone NameMSMg01-171E19
Chromosome4 (Build37)
Map Location 123,048,496 - 123,197,150
singlet/doubletdoublet
Overlap geneMacf1, D830031N03Rik
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171E19.T7 (MSMg01no171_e19.b1)MSMg01-171E19.TJ (MSMg01no171_e19.g1)
ACCAG367588AG367589
length729755
length of high quality
(start - end)		318 (45 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no171_e19.b1 PHD_FILE: MSMg01no171_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:29 2005CHROMAT_FILE: MSMg01no171_e19.g1 PHD_FILE: MSMg01no171_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,048,496 - 123,048,807)(123,196,878 - 123,197,150)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCATTTAATTTCCTGTTGCTGTGATAAAATGATGTCAGGCCAAT
AGGCTTTTGGATCCAGCAAAGGCCAGGCTTCTAGTGACCTGCCAGTGAAG
CTGTGAATGGCTGTTCCCTGGGTTATACTTCACCACTTTTTTTTTTTTCT
TTCCCCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCTTGGAACTCAC
TCTGTAGACCAGGCTGGCCTTGAACTCAGAAATTTGCCTGCCTCTGCTTT
ACACTTCACTTTCTAAGACTTTGAACTATTTCAGCTAATGGCTTCAGAAA
TACAATGCATTTTTTTGAACCCGCCCCCCCCGCATGATGAAACATGAAGA
TGCTGCCCCATGCCTTGATTCCTAACTCATGAGAACTGATACTCGGAGCT
GCTGGAAGCTGCTACCTCTGCAGCGATAATACAGCAATCTGTAGCAAGGA
TAAAGGGGATCCCCGGGTGAAGGGCATGTGGCCCAGGACACACACAGGAC
ACAGAGAAGCAGGTACCTGATGCTCAGTGATAAGAGCTTTAACTCTGTCT
ATGTTCTGAGGGATGGGCTCCTGATCCCGCTGGATTAGGGTGGTCTCAGC
CCACTGGATCCATGCCAGAAGTTCTTCCAGGAGCTCAGCATTAGCCACTA
GTTCTGACAGAGCAGTTTCCAGGCGCTGT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGTAGCACCTACATGTTGTG
GAGCAAGCACAGGTGCCACCAACACCCGTGATAGATAAATAAGTAGATAG
GTAGATAGACAGATATTGAACTAACTGTCTTTAAGAGGTTGGATGGCTGA
CTTGGTGAGAAAAGGGCTTCCTGTGCAAACATGCAGACCAGAGTTCAGAT
CCCCTGCAGCCATGTAAAAAGTCAGAAATAGTGGTTATGTAGCTTAACTG
GTGAGTTTCACATTCAGTAAGAGACCCTGTTTCAAAAAAAAAAAAAAAAG
AAAACAAAATTTTTATAAATTCCCCCCCCCCCCCCCAAAAAACAAACCAA
AAAGATGAGCAATGATAGAAGAGGAAGATGACCAAAGTTGACCTTCCCCT
GCCTGTGTGCACACACATACATGACTGCATTCCCACACACGCCTTCGTGA
ATTTTAAGGGCTGGTAGATAACTCAGTAAAGTGCTGTGTTGCTAACTCAA
GGGCCTCAGTTTGATCCCCAGAACTCATGTATAAAAAGCCAGGCATGGTA
ACTTGGCCAGTGGTGACTAGCCAGTTCTCTCCTTATATTCCATGGGTCCT
GAGAGAATTTAACTCAGATTGTCACGCTTGGTGGCAAGCGCTCTTTTCCC
GCTGAGTCCTTTTTCCAGCTACGGAAAAAAAAATGTTTATGCTTTCCAAA
CCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_e19.b1 MSMg01no171_e19.b1 CHROMAT_FILE:
MSMg01no171_e19.b1 PHD_FILE: MSMg01no171_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:29 2005
         (318 letters)



>mm_chr4_123048293_123049010
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcatttaatttcctgttgctgtgataaaatgatgtcaggccaataggcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcatttaatttcctgttgctgtgataaaatgatgtcaggccaataggcttt 263

                                                                       
Query: 64  tggatccagcaaaggccaggcttctagtgacctgccagtgaagctgtgaatggctgttcc 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggatccagcaaaggtcaggcttctagtgacctgccagtgaagctgtgaatggctgttcc 323

                                                                       
Query: 124 ctgggttatacttcaccacttttttttttttctttccccaagacagggtttctctgtata 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 ctgggttatacttcaccacttttttttttttttttccccaagacagggtttctctgtata 383

                                                                       
Query: 184 gccctggctgtcttggaactcactctgtagaccaggctggccttgaactcagaaatttgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccctggctgtcttggaactcactctgtagaccaggctggccttgaactcagaaatttgc 443

                                                                       
Query: 244 ctgcctctgctttacacttcactttctaagactttgaactatttcagctaatggcttcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgcctctgctttacacttcactttctaagactttgaactatttcagctaatggcttcag 503

                       
Query: 304 aaatacaatgca 315
           ||||||||||||
Sbjct: 504 aaatacaatgca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_e19.g1 MSMg01no171_e19.g1 CHROMAT_FILE:
MSMg01no171_e19.g1 PHD_FILE: MSMg01no171_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:29 2005
         (287 letters)



>mm_chr4_123196649_123197335
          Length = 687

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctgtagcacctacatgttgtggagcaagcacaggtgccaccaacacccgtgatagat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 catctgtagaacctacatgttgtggagcaagcacaggtgccaccaacacacgtgatagat 443

                                                                       
Query: 61  aaataagtagataggtagatagacagatattgaactaactgtctttaagaggttggatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaataagtagataggtagatagacagatattgaactaactgtctttaagaggttggatgg 383

                                                                       
Query: 121 ctgacttggtgagaaaagggcttcctgtgcaaacatgcagaccagagttcagatcccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgacttggtgagaaaagggcttcctgtgcaaacatgcagaccagagttcagatcccctg 323

                                                                       
Query: 181 cagccatgtaaaaagtcagaaatagtggttatgtagcttaactggtgagtttcacattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagccatgtaaaaagtcagaaatagtggttatgtagcttaactggtgagtttcacattca 263

                                            
Query: 241 gtaagagaccctgtttcaaaaaaaaaaaaaaaa 273
           |||||||||||||||||||||||||||||||||
Sbjct: 262 gtaagagaccctgtttcaaaaaaaaaaaaaaaa 230


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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