BAC Information

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BAC

Clone NameMSMg01-171J08
Chromosome4 (Build37)
Map Location 95,589,994 - 95,742,517
singlet/doubletdoublet
Overlap geneHook1, Cyp2j13
Upstream gene4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
Downstream geneLOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171J08.T7 (MSMg01no171_j08.b1)MSMg01-171J08.TJ (MSMg01no171_j08.g1)
ACCAG367776AG367777
length726733
length of high quality
(start - end)		315 (45 - 359)277 (80 - 356)
definitionCHROMAT_FILE: MSMg01no171_j08.b1 PHD_FILE: MSMg01no171_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:50 2005CHROMAT_FILE: MSMg01no171_j08.g1 PHD_FILE: MSMg01no171_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,742,207 - 95,742,517)(95,589,994 - 95,590,268)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCTCTATAACAGGTCAGCTGTGGACTTCACAAATAGGCTCAGA
GCCTCAGCCTAGGAGAGACACACAAGTAGAGCAAGTGACAAGTTGGCATC
CACAAGCTCCATCTCTGTAGGGTTCAAATGGGTCCCATCTTTATGGGGTT
TGACTACAGGACATAGAAGTAGAACAATAAAGAGATCGCTGGCCTGCTGA
TCTTAACTTCCCTTGGCTTTTGTCAAAAGAGTAACATTTAATGGAAGTTC
TGCTTATAGCAAATGCTATCATAAATTGCAAGAATAAAATGACATGGTTT
TATTCAATCTTTTTGTGCCCCCCCCCGCATCCTTTATGTCTTGCTATAAA
GTCATATGGAACCGTGGAGGTTGAAAGTCTGGTATCACAGGAATAGCTCA
TAGTGAAACTGAAGCTGGGAAGATCCTCAATCCAGCAATGTTTTTCATCC
TTTTAGTTTGTATTTTCTATGGGCTTGCAAATTGATATCTGAGTGCAAAC
AAATAAAATTAAATGATATAATTTAGGTGTATTTAAATTCTAGTTCAGGT
TATTAGGAAACAATCCCACAAGCTATTCTATGTGGGAATAGAATAGCTAT
TGTGTTTTGTGATCCCCTCCATTTAGACTCCATGATAGGCACACATGGAG
TCCCGTTAGCAATTATCGCCTGCTTT

AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAATATGAGAACTTTGG
TTTATCAAGATCCAAAGCTTAGCTGGTCAGAGCTGGAGTCACATACAAAC
TTCCAAATTCTCAGACTAATATTTTCATCCTGAATCATAGGAAGAAATCT
GTTTTTCTCTATGCTAAAGTATGGGAATCTTTTATGTTCACAGCAAAGGA
CCAGCTGGCATTCTCCTACCCTTTATATATTTCTTGGCACTGAAGGCTAG
AAAATCCCCCATGTTTAAATGCCTAGTCAACAAAAATATTTATTTATTTA
TTTAACAATTGATTGCTTGTTATCCCTAACGATCCACTGAGCTCTGGGAA
GGATGCAGAGAGCGATGAGGCACTACTAGATAAATACAGAGAGATGATTT
TAAGTTAACATGAATAAATTCTTCCATAGAAATGCCAGCAGGCAACAACA
TAACCGGAAGAAGGAATAACTGGGACCATGCATGGAGAAAGGAAAATTTT
AGAGGAAGACCATGTCTCCGCTGACTTTAAATGTTTAAAAGACATTTCCA
AACAGGCCAAAGTAGAGAAGAACATTCTTGGTAGAGGAAATAATCTATGC
AAAGGGTCAGCTTTTATACTGAGATCACTACAATCAGAACACTAGGTGCA
TATGAGGAAGTGAGGCCGGTCTTAAGTCAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_j08.b1 MSMg01no171_j08.b1 CHROMAT_FILE:
MSMg01no171_j08.b1 PHD_FILE: MSMg01no171_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:50 2005
         (315 letters)



>mm_chr4_95742003_95742717
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctctctataacaggtcagctgtggacttcacaaataggctcagagcctcagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctcctctctataacaggtcagctgtggacttcacaaataggctcagagcctcagc 456

                                                                       
Query: 65  ctaggagagacacacaagtagagcaagtgacaagttggcatccacaagctccatctctgt 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctaggagagacacacaagtaaagcaagtgacaagttggcatccacaagctccatctctgt 396

                                                                       
Query: 125 agggttcaaatgggtcccatctttatggggtttgactacaggacatagaagtagaacaat 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 395 agggttcaaatgggtcccatctttatggggtttgactacaggatatagaagtagaacaat 336

                                                                       
Query: 185 aaagagatcgctggcctgctgatcttaacttcccttggcttttgtcaaaagagtaacatt 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 aaagagatcgctggcctgctgatcttaacttcccttggcttttggcaaaagagtaacatt 276

                                                                       
Query: 245 taatggaagttctgcttatagcaaatgctatcataaattgcaagaataaaatgacatggt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 275 taatggaagttctgcttatagcaaatgctatcaaaaattgcaagaataaaatgacatggt 216

                      
Query: 305 tttattcaatc 315
           |||||||||||
Sbjct: 215 tttattcaatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_j08.g1 MSMg01no171_j08.g1 CHROMAT_FILE:
MSMg01no171_j08.g1 PHD_FILE: MSMg01no171_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:50 2005
         (277 letters)



>mm_chr4_95589794_95590470
          Length = 677

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccaatatgagaactttggtttatcaagatccaaagcttagctggtcagagctggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccaatatgagaactttggtttatcaagatccaaagcttagctggtcagagctggagt 260

                                                                       
Query: 61  cacatacaaacttccaaattctcagactaatattttcatcctgaatcataggaagaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatacaaacttccaaattctcagactaatattttcatcctgaatcataggaagaaatc 320

                                                                       
Query: 121 tgtttttctctatgctaaagtatgggaatcttttatgttcacagcaaaggaccagctggc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgtttttctctatgctaaagtatgggaatcttttatgttcacatcaaaggaccagctggc 380

                                                                       
Query: 181 attctcctaccctttatatatttcttggcactgaaggctagaaaatcccccatgtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctcctaccctttatatatttcttggcactgaaggctagaaaatcccccatgtttaaa 440

                                              
Query: 241 tgcctagtcaacaaaaatatttatttatttattta 275
           |||| ||||||||||||||||||||||||||||||
Sbjct: 441 tgccaagtcaacaaaaatatttatttatttattta 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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