Query= MSMg01no171_m18.b1 MSMg01no171_m18.b1 CHROMAT_FILE:
MSMg01no171_m18.b1 PHD_FILE: MSMg01no171_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:06 2005
(273 letters)
>mm_chr4_19357246_19357919
Length = 674
Score = 516 bits (267), Expect = e-151
Identities = 270/271 (99%), Gaps = 1/271 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttttaggcctaggatctttactgacttcaaactctgcaaatcacagtaacag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttttaggcctaggatctttactgacttcaaactctgcaaatcacagtaacag 263
Query: 64 atgagatttctctagatttttacctaatataagttttgctgattacttaaactacatgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgagatttctctagatttttacctaatataagttttgctgattacttaaactacatgaa 323
Query: 124 gtctaacatatcatgtcatgaataataagttttaagagtgacactgattttgaatatttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctaacatatcatgtcatgaataataagttttaagagtgacactgattttgaatatttt 383
Query: 184 ttt-cagctaactgtgagaaccaggattgggtaataggccaactaacaagacagaaatct 242
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttcagctaactgtgagaaccaggattgggtaataggccaactaacaagacagaaatct 443
Query: 243 gatcaacaattgcttctagagtggagttggg 273
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Sbjct: 444 gatcaacaattgcttctagagtggagttggg 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space: 175560
Effective search space used: 175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no171_m18.g1 MSMg01no171_m18.g1 CHROMAT_FILE:
MSMg01no171_m18.g1 PHD_FILE: MSMg01no171_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:06 2005
(286 letters)
>mm_chr4_19501055_19501742
Length = 688
Score = 499 bits (258), Expect = e-146
Identities = 280/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 1 cagtctagtctgaactactgggtgagactgttagactctgcatcttaagcactcagatag 60
|||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct: 488 cagtctagtctgaactactgagtgagactgttagactctgcatcttaagaattcagatag 429
Query: 61 ataccccagttctttcctgggtaggaacacataaaaaataagacaggttatatcc--gag 118
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 428 ataccccagttctttcctgggtagggacacataaaaaataagacaggttatatccgagag 369
Query: 119 agagagagagaaatcagattttaatttaacttacatttgttgtcttaaattacttaaata 178
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 368 agagagagagaaatcagattttaatttaacttttatttgttgtcttaaattacttaaata 309
Query: 179 cccatttactaaaggtgctatgtggtgctgggacccttcatgtcctttaaccgttatgct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cccatttactaaaggtgctatgtggtgctgggacccttcatgtcctttaaccgttatgct 249
Query: 239 attcatcgttaggtgtagataggaactgcaagttataaatgaggaaga 286
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attcatcgttaggtgtagataggaactgcaagttataaatgaggaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 688
Length adjustment: 9
Effective length of query: 277
Effective length of database: 679
Effective search space: 188083
Effective search space used: 188083
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
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