Query= MSMg01no172_f10.b1 MSMg01no172_f10.b1 CHROMAT_FILE:
MSMg01no172_f10.b1 PHD_FILE: MSMg01no172_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:47 2005
(249 letters)
>mm_chr4_9405803_9406451
Length = 649
Score = 458 bits (237), Expect = e-133
Identities = 246/249 (98%)
Strand = Plus / Minus
Query: 1 atcccattttataattgggttgttttcttgatactaattgtttgagttctttccatattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 537 atcccattttataattgggttgttttcttgatactaattgtttgagttctttaaatattt 478
Query: 61 tggatattagccctctaccagaaatataagaataatcaattttctagcagtgaagagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tggatattagccctctaccagaaatataagaataatcaattttctagcagtgaagagtga 418
Query: 121 tagaactgacagatatcgtatattttcttaaccaataagtttgtaaatggatacctacag 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tagagctgacagatatcgtatattttcttaaccaataagtttgtaaatggatacctacag 358
Query: 181 tgctaggggcctgagtcagtgttagagctctagcctgggttgtacgagaccctgggcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgctaggggcctgagtcagtgttagagctctagcctgggttgtacgagaccctgggcttg 298
Query: 241 cttgctaga 249
|||||||||
Sbjct: 297 cttgctaga 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_f10.g1 MSMg01no172_f10.g1 CHROMAT_FILE:
MSMg01no172_f10.g1 PHD_FILE: MSMg01no172_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:47 2005
(284 letters)
>mm_chr4_9262417_9263103
Length = 687
Score = 439 bits (227), Expect = e-128
Identities = 264/287 (91%), Gaps = 18/287 (6%)
Strand = Plus / Plus
Query: 1 tttcattagacttgctttctggcactgtaactcggaaacagtgtactccgtgagccacat 60
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 201 tttcattagacttgctttctggcactgtaactcagaaacagtgtactcagtgagccacat 260
Query: 61 cgctctgagtcttcgagctgtaaggtcacacgcatctcgagctgtcactgaggagtgtgt 120
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctctgagtctgcgagcagtaaggtcacacgcatctcgagctgtcactgaggagtgtgt 320
Query: 121 cactgaggagtgtgtcactgaggaaggtgtcactgaggagtgtg---tcactgaggagtg 177
||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 321 cactgagga---------------aggtgtcactgaggagtgtggtgtcactgaggagtg 365
Query: 178 gcagcagggagaaaatggcaacttagaaagcagcacacaagttgcattcattatgaagac 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcagcatggagaaaatggcaacttagaaagcagcacacaagttgcattcattatgaagac 425
Query: 238 cgtgaggctaggccatgatgtaagtatagtaatactctctgtggctt 284
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cgtgaggctaggccatgatgtaagtatagtaatactctctgtggctt 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 687
Length adjustment: 9
Effective length of query: 275
Effective length of database: 678
Effective search space: 186450
Effective search space used: 186450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
