NAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGGGTATACTAAAGTCTCAGATCCCTCTTCTTAATCT
GAGAACAAAAACTAGAGCCAAAGAGAGGCCGTGACTTGCCAAAGGGCATG
AAGCAAGTCCTGGCAGTCAGTACAGCACATAAGTCAGAAGTTTCTACACT
CGGATCATAGCATCATCTAAGATGCACTGAGCGCTGCCTGTAAACCAGAT
GCTCTTCTAGGTGGTTTTGATTGTTCTCACTCATTTAACTTGCACCACTA
ACTACCCCAGCAGACCATTCGTATTTTTTTTCGCAGAGCCAAGGTTGCAC
AATTGACAAACAGTTAGATTCNTACCANTTCTAACCACAATTCATAATAG
TAGTAATAATCATANAACCCCTCAGCTACAACAAAACACCCTCCAGTAGA
GTCTTCAAGCAGAGTCTACTCTCTAATGGTTCGTTTGCTTTGAAATTGGG
TAGGTTCATCTCTTCTCCCACCCGCAATCCTTCATCACTCTGGAAAAGCA
TTCCAAGAAGTGGCTCCTTCCAGTCCTCTGCTTGGATGCTTGGGCTATGT
TGCTGACTTCCCACACGCTATTCCTTGGCTTCCACATCCCGGCCCTCGTT
CGGTTTCTCTTCTCACCGGACTGGGATGCTCATGGCACAAACAACACGTT
CTTCCCCTGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTACTTTACAGGCCTAGACTTACACTGGAGGT
GTTTATATTCTCTCCTTTGGTTCTAAGACTTTAGGTAGTTTGTGATGAGC
TACACCCCAATGCTAGCACAGTCTTGCTTTACTAGGTGCTCTTAAATACA
GATGATAAAACTACACCTTAGCTTTCCAGAAACATCTTCTCAAAAGCAAT
AAATCCAGTACAAATCATAAGATGAAAAATGTAAGCAGGCCAAAAACTTC
CGGACAATTTTGTTTTGGAATATTATACTTATTTTCAAATGTCCATGTTT
TNATTATTCCCCCCCCACCCCCCAGATCATTTATTAAATATGTTCCTCTC
TTATNTCTAACCTGTAAAAACAGAACCCTGAGTACTCTACGGCTAGTATG
TAATATCTTCATGCTCTGAATATATAAGCAACCAGTGGAACAGAACAGGC
ATAATTGCAGACTCCAAATGAGATTAATGATTACATCTTCAGGGATAACC
CATGCTTTCCCCTCACGAATTATGTATCCCGTTATGTTCCACATACATAC
CAACCTAACATGATACCCTTTATTCACTTATGCCCTTATGCACCACTCTG
GCCTGTCCATTTTACTGATGTGAATATTATCCCCCTAACACCCAATTTTA
TTCCTTCCCGGCTCTTATTCTTCCTACTAATTCTCTTGATTACTTCTCTT
TCGACCTTN

Query= MSMg01no172_k23.b1 MSMg01no172_k23.b1 CHROMAT_FILE:
MSMg01no172_k23.b1 PHD_FILE: MSMg01no172_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:12 2005
         (251 letters)



>mm_chr4_105886717_105887367
          Length = 651

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtctcagatccctcttcttaatctgagaacaaaaactagagccaaagagaggccgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 201 aagtctcagatccctcttcttaatctgagaacaaaaactagagccaaagagagggggtga 260

                                                                       
Query: 61  cttgccaaagggcatgaagcaagtcctggcagtcagtacagcacataagtcagaagtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgccaaagggcatgaagcaagtcctggcagtcagtacagcacataagtcagaagtttc 320

                                                                       
Query: 121 tacactcggatcatagcatcatctaagatgcactgagcgctgcctgtaaaccagatgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tacactcggatcatagcatcatctaagatgcactgagcgctgcctgtaaaccagatgctg 380

                                                                       
Query: 181 ttctaggtggttttgattgttctcactcatttaacttgcaccactaactaccccagcaga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaggtggttttaattgttctcactcatttaacttgcaccactaactaccccagcaga 440

                    
Query: 241 ccattcgta 249
           |||||||||
Sbjct: 441 ccattcgta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no172_k23.g1 MSMg01no172_k23.g1 CHROMAT_FILE:
MSMg01no172_k23.g1 PHD_FILE: MSMg01no172_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:12 2005
         (154 letters)



>mm_chr4_106056425_106056978
          Length = 554

 Score =  290 bits (150), Expect = 2e-83
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagactttaggtagtttgtgatgagctacaccccaatgctagcacagtcttgcttta 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 354 tctaagactttaggtagtttgtgatgagctacaccccaatgccagcacagtcttgcttta 295

                                                                       
Query: 61  ctaggtgctcttaaatacagatgataaaactacaccttagctttccagaaacatcttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctaggtgctcttaaatacagatgataaaactacaccttagctttccagaaacatcttctc 235

                                             
Query: 121 aaaagcaataaatccagtacaaatcataagatga 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 aaaagcaataaatccagtacaaatcataagatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)