Query= MSMg01no173_e05.b1 MSMg01no173_e05.b1 CHROMAT_FILE:
MSMg01no173_e05.b1 PHD_FILE: MSMg01no173_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:54 2005
(288 letters)
>mm_chr4_119520812_119521499
Length = 688
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%), Gaps = 2/289 (0%)
Strand = Plus / Plus
Query: 1 atgtgcctttgaggaaagttttgcaaattgcttgctgtgtggggccagagacccgaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgcctttgaggaaagttttgcaaattgcttgctgtgtggggccagagacccgaagtc 260
Query: 61 tccaccgtgaaaactcctggtgcttaattcatatttgtagattgctagatgtgcaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaccgtgaaaactcctggtgcttaattcatatttgtagattgctagatgtgcaattaa 320
Query: 121 ttaaaaactgctattagttgcttccatggaaacttgctggggtaccctggagtacctcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaaactgctattagttgcttccatggaaacttgctggggtaccctggagtacctcat 380
Query: 181 aaatgaaactaggtcttgtatgagttatacaattgtatatgtgtgtatttctttaaatct 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgaagctaggtcttgtatgagttatacaattgtatatgtgtgtatttctttaaatct 440
Query: 241 caaatgcaggactaatatttctcaa-ttcatttttctgtctttaatcta 288
||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 441 caaatgcaggactaatatttc-caaattcatttttctgtctttaatcta 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no173_e05.g1 MSMg01no173_e05.g1 CHROMAT_FILE:
MSMg01no173_e05.g1 PHD_FILE: MSMg01no173_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:54 2005
(587 letters)
>mm_chr4_119560865_119561852
Length = 988
Score = 1071 bits (554), Expect = 0.0
Identities = 572/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 attaaccctaggggaagttccagaggattcttttctacgttctctattccctgtataatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 578 attaaccctaggggaagttccagaggattcttttctacgttctctattacctgtataatt 519
Query: 61 acagtctccgagtccccgatttgacattagtgtagggttttaagtgtctcaaactactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acagtctccgagtccccgatttgacattagtgtagggttttaagtgtctcaaactactgg 459
Query: 121 gcatcacacacaactgctcttcctaggaatgagagctaccagcccaagcaccagcctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gcatcacacacaactgctcttcctaggaatgagagctaccagcccaagcaccagcctgtc 399
Query: 181 atagctctacactgctttagacctgcaaggctgaggttaatgtttaaagaatgtccagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atagctctacactgctttagacctgcaaggctgaggttaatgtttaaagaatgtccagga 339
Query: 241 ccctcctcccactgcagactgcatcgggagtctctaggagactcacagtaaggctcacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccctcctcccactgcagactgcatcgggagtctctaggagactcacagtaaggctcacag 279
Query: 301 acagcagaagggtggagtacgatctgac-ggattgtggccttaaagggggaggaggaagg 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 278 acagcagaagggtggagtacgatctgacaggattgtggccttaaagggggaggaggaagg 219
Query: 360 actatctcactcatttctgaccatgtgaggatccagcaagaaagcaatcgttcacaagtc 419
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 218 actatctcactcatttctgactatgtgaggatccagcaagaaagcagtcgttcacaagtc 159
Query: 420 aagaagaagagtactccccagaatccagccattcaggcacctggatttcagaaggcgttt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 158 aagaagaagagtactccccagaatccagccattcaggcacctggatttcagaaggcattt 99
Query: 480 tgatcacttctccattgctataataaaatatcttgattaaaaataggcaaatgaagagat 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 98 tgatcacttctccattgctataataaaatatcttgatttaaaataggcaaatgaagagat 39
Query: 540 aaaagggttttgttttggattatgatgctataggatat 577
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 aaaagggttttgttttggattatgatgctataggatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
