BAC Information

Click to search

BAC

Clone NameMSMg01-173F10
Chromosome4 (Build37)
Map Location 38,976,493 - 38,976,719
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F10.T7 (MSMg01no173_f10.b1)MSMg01-173F10.TJ (MSMg01no173_f10.g1)
ACCAG368972AG368973
length696704
length of high quality
(start - end)
311 (21 - 331)284 (60 - 343)
definitionCHROMAT_FILE: MSMg01no173_f10.b1 PHD_FILE: MSMg01no173_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:00 2005CHROMAT_FILE: MSMg01no173_f10.g1 PHD_FILE: MSMg01no173_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACTGAGGAATATTGAAT
GGCTGAGAAACACCTAAAGAAATGTTCAACATCTTTAGTCATCACCCAAA
TGCAAATTAAAACAACCCTGAGATTCCACCTCACACTGGTCAGAAAGTCT
AAGATCAAAAACTCAGGTGACAGCAGATGGTGATGAGGATGTGGAGAAGG
AGGAACACTCCTCCATTGCTGGTGGAATTTCAAGCTGGTACAACCACTCT
GGAAATCAGTCTGGCTGTTCTTCTGAAAATTGAACATAGTACTTTCTACC
TAAGGACCCAGCTCTACTATTCCTGGTCTTTNATCCTTTACCCCCNTCTA
CCCTATAACAAGGACACATGCTCCATTATGTTCATAGCTACCATATATAA
TAATAGCCAGAAGCTGGAAACAACCCAGATGTCCCTCAACAGAGGAATAG
ATACAAAATATGTGGTACCTTTACACTATGCAATATTACTTAGCTATTAT
ATTCTATAACTTGGACGGGCGTGGTGGCGCACGTCTTTAATCCCAGCACT
TGGAAGGTATATGTAGGCGCATTTCTGAGTTGTATTTCAGCCTGGTCTAC
TGATCGAGTTCCAGGATAGCCCGCGTTATTCATATATTTCCTGTTTCAAA
TTACCCTTTATTTTCTACCCCTATCTTCCTGATTTTGTTAGTCCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGGACACATCACCAGTCCATTGTTCAAATTCTTCACCAAC
ATATAACACTAATGGTCTTTTTTTCTTCCCAGGAAGATGTGGTTGAGTAG
GTAAGAAGAAAAATGATATAAACTATTTACTTTTATTCACTTTCAAGGAA
ACCTCATGGAAATTAGGTGAAAGCTATACCAATGATAAATGAAACAATAG
GAGTAAAATCTAAGTAACTTGAATAGAATTCTACTTTCTTAGAACTTGAA
TATAATTCTACTTCTTTGGAATGAAATATTTTTTAAAGTATAGTTTGTTC
CCCTGCCATNCACCTAATACAAACATTATAATTCCTTGATAAGAAGATAA
AACTGAGAAAGATACCAACATGATTTATATAAATAATAGAACAATGCTGC
TGATTCTCAGAACTAGGGGAGACCATTAGCAATGTACAACATCAGTTTCA
GTGGAGATCCCATTGGGCTGAAGATGCCAAGACTATGTAGCAGCAGATTT
GGAGTACATTGAGCCTGAGTTATCATATAAATTGTGCTGCAGGTGTCAGA
ATGGAATATGCTGAACCATTCAAGCCCCTTGGAACCCAGCAGATCCTGAG
TGAGCCCCAGATATCAGATCCTGAGATTCCTTCACTGCTGGACTCTGACA
TTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f10.g1 MSMg01no173_f10.g1 CHROMAT_FILE:
MSMg01no173_f10.g1 PHD_FILE: MSMg01no173_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:00 2005
         (284 letters)



>mm_chr4_38976293_38976976
          Length = 684

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacacatcaccagtccattgttcaaattcttcaccaacatataacactaatggtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacacatcaccagtccattgttcaaattcttcaccaacatataacactaatggtctt 260

                                                                       
Query: 61  tttttcttcccaggaagatgtggttgagtaggtaagaagaaaaatgatataaactattta 120
            |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cttttcttcacaggaagatgtggttgagtaggtaaggagaaaaatgatataaactattta 320

                                                                       
Query: 121 cttttattcactttcaaggaaacctcatggaaattaggtgaaagctataccaatgataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttattcactttcaaggaaacctcatggaaattaggtgaaagctataccaatgataaa 380

                                                          
Query: 181 tgaaacaataggagtaaaatctaagtaacttgaatagaattctactt 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaacaataggagtaaaatctaagtaacttgaatagaattctactt 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)