BAC Information

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BAC

Clone NameMSMg01-173M02
Chromosome4 (Build37)
Map Location 57,530,633 - 57,531,214
singlet/doubletsinglet
Overlap genenone
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049
Downstream genePalm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173M02.T7 (MSMg01no173_m02.b1)MSMg01-173M02.TJ (MSMg01no173_m02.g1)
ACCAG369268AG369269
length682801
length of high quality
(start - end)
548 (46 - 593)48 (257 - 304)
definitionCHROMAT_FILE: MSMg01no173_m02.b1 PHD_FILE: MSMg01no173_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:29 2005CHROMAT_FILE: MSMg01no173_m02.g1 PHD_FILE: MSMg01no173_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTTCGAGAGGATCCGCGGAATTCTGCTGTCTTCGCAGAATAAT
AGACCACAAGTTCAACTGAGAGTTAGTTAAAACCGCACACATTTTTACCA
CTGTGCCCAACACACAGGGAGACTGATGCTCCCAGAATGCCAGCTAGCTC
CAAGGCTGAAGCTTGGCGTCTTCAGAGGACCACAGACTACTATCACATGC
ATTTCTGCCCCCAGAGGCTGTTGTCACATTGGGGAATTAGTGGATGGGTG
TACAGGAGTTAGTTCTAAATTATATGAAGCTTGACTTCCCACCCCTGGTA
TTCATAAAAGAACATCCAGGGTTCCTGCTTCGTGCATCACTGAATTTCTA
GACTCCATTATGGAGACTGTTGGAAGTAGGCATCCAATAAATACTTATTG
AATACATGCACTAGACTGCTAATCAAGTTCCTTGCAGAGACGGAAAAAGC
CACTGTGTGTAGGGGACTTGGGTTGGAATTGGGTGCTGCTGGTGCACAGG
AAGGAAACAGAAAGCTCAAAGGAATGGGGACATGGATTCTAAGCACCCAT
CTCCCCAGTGGAAATCCAGGAGGACAGGCCAACACTAGGTAACCAATAGC
ACATCTTCACAATAAAATGCAAACAAATATCCCAGTTCCTGAATGTCCTG
CTGAGACTACTTGTCAGAAGTTGGACCTGCGC
NNNNNNNTTTTTATNTTATTTTTTGTATCAGCGATGCGAGCGAATNNNNT
TTCTGTATGAAGGGGTAGGCAGGNGGNNGCCGTTTTCGGAGCNGNANGGN
ANNNANNGANGTTTACAAAAAAAAGGGGANNGANNNNAGAANGANANNNA
AGGGGAAAAAAAANNNATTTTGCCCCCAAAAAGGGGTGGTTNNAAGAANA
GATATGAAANAGATGGAANTAGTGTGGATTTGGTTGGNTGAAATATNAAA
AGNANNAGTTTGATGGTTTGTATTTGGTTGGNNTGGAGAGTGGNAATGTA
TATAATTATGGNNNTGTTGGAGTAGGTGTGGNNTTGTTGGAGTAGGTATG
TTANTGTGGGGGGGGATTTTTTTTTTTTTANNNNAGNGGNANGGAAGNGA
GNANNNNAATAGTTTTTTTCACACGAAGACGCAGAACTCTAAGCTCTGCC
TGCATCCTGCCTGCCTAGACATTGAAAAGAAAAAGACTTGATGGTGGAGT
GGAACTCTGAACCTGTAAGGCAGACCCAATTAAATGATGTCTTTTATAAG
ACTTGCATTGGTCATGGTGTCTGTTTACAGGAGGTAAAACCCTAAGGACA
ATTAGTAGTGGGGGTTCAGTGGAAAACAGCAGGAAAACAGGCAAGGTAAA
TGAATAAAAGGTTGAACCAGTGGAAAATTATTAAGGCATAAAAATATACA
AGCAGGGAAAACAAGTTGATAACAGGAATGTTAAATGGTTCTGAAAGATT
GGGGGTTTTTAAAAATTATAACGAATATTGAGAGGAAGGAAAGGTCCGGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_m02.b1 MSMg01no173_m02.b1 CHROMAT_FILE:
MSMg01no173_m02.b1 PHD_FILE: MSMg01no173_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:29 2005
         (548 letters)



>mm_chr4_57530433_57531381
          Length = 949

 Score =  946 bits (489), Expect = 0.0
 Identities = 543/583 (93%), Gaps = 36/583 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatagaccacaagttcaactgagagttagttaaaaccgcacacatttttaccactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatagaccacaagttcaactgagagttagttaaaaccgcacacatttttaccactgtg 260

                                                                       
Query: 61  cccaacacacagggagactgatgctcccagaatgccagctagctccaaggctgaagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaacacacagggagactgatgctcccagaatgccagctagctccaaggctgaagcttg 320

                                                                       
Query: 121 gcgtcttcagaggaccacagactactatcacatgcatttctgccccc-agaggctgttgt 179
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gcgtcttcagaggaccacagattactatcacatgcatttctgccccccagaggctgttgt 380

                                                                       
Query: 180 cacattggggaattagtggatgggtgtacaggagttagttctaaattatatgaagcttga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacattggggaattagtggatgggtgtacaggagttagttctaaattatatgaagcttga 440

                                                                       
Query: 240 cttcccacccctggtattcataaaagaacatccagggttcctgcttcgtgcatcactgaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcccacccctggtattcataaaagaacatccagggttcctgcttcgtgcatcactgaa 500

                                                                       
Query: 300 tttctagactccattatggagactgttggaagtaggcatccaataaatacttattgaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctagactccattatggagactgttggaagtaggcatccaataaatacttattgaata 560

                                                                       
Query: 360 catgcactagactgctaatcaagttccttgcagagacggaaaaagccactgtgtgtaggg 419
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 561 catgcactagactgctaatcaagtgccttgcagagacggaaaa-gccactgtgtgtaggg 619

                                                                       
Query: 420 gacttgggttggaattgggtgctgctggtgcacaggaa---------------------- 457
           ||||| ||||||||||||||||||||||||||||||||                      
Sbjct: 620 gacttaggttggaattgggtgctgctggtgcacaggaactctcttggaaggtttaaacaa 679

                                                                       
Query: 458 ------------ggaaacagaaagctcaaaggaatggggacatggattctaagcacccat 505
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actgtagtcaaaggaaacagaaagctcaaaggaatggggacatggattctaagcacccat 739

                                                      
Query: 506 ctccccagtggaaatccaggaggacaggccaacactaggtaac 548
           ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 740 ctccccagtggaaatccaggaggacaggccagcactaggtaac 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space:   505182
Effective search space used:   505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)