BAC Information

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BAC

Clone NameMSMg01-173P07
Chromosome4 (Build37)
Map Location 81,275,258 - 81,275,487
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131
Downstream geneLOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173P07.T7 (MSMg01no173_p07.b1)MSMg01-173P07.TJ (MSMg01no173_p07.g1)
ACCAG369405AG369406
length727709
length of high quality
(start - end)
320 (46 - 365)234 (125 - 358)
definitionCHROMAT_FILE: MSMg01no173_p07.b1 PHD_FILE: MSMg01no173_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:43 2005CHROMAT_FILE: MSMg01no173_p07.g1 PHD_FILE: MSMg01no173_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTCCCATATCTAAACAGGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATAAAAGTAAATGGTGAGAAGCTGGAAGCAACCCACTAAAAT
CACGGACTAGACAAGGCTGTCCACTCTCTCCCTTCCTATTCAACATTGTA
CTTGAAGGCCAAGCCAGAGCAATTAGACAACAAAAGGTGATCAAGGGGAT
ACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATTATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGC
CTGATAAACAGCTTCTTTGAAGTACCTCGCCCCCCAATTAACTCAAACAA
GTCAATGTCCTATCTGTACNCAAAGGATAAACAGGCTGAGAAAGAAATTA
GGGAAATAACACCCTTCTCAATAGTAACAAATACTATAAAAATACCTTGG
CGTGACTCTAACTAAGGAAGTTAAAGATCTGTATGATAAGAACTTCAAGA
CTCTGAAGAAAGAAATTAAAGAAGATCTAAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGTTTTCTTGCCAAA
AGCAATCTACAGTTTCAATGAAATCCCCATCAAAATTCCAACTCAATTCT
TCAACGAATTATAAAGGGCAATAGAAA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTAATCAGTCACACATTCAACAG
GTACTTATAAAACACTTCAGTGCAGGCAAACAGCGATCTCTGGTTAATGG
GGATCCAACGTTATGCTCTACTTTCTGGAAGCCTAAAACGCTTAATCTGA
GAACGTGTTTGGCATAGTGTAAGCACATCGTGAATTTGCTATTATTATCA
CAACTCTTACAATAAAATTGTACAGAGTCACTTCTCTATGATTGCTTTTC
TATAGATGTTCCACACTGTCTTTTGAGCAACTAGGGGGTGACTTTAAACA
CCCTGTATGTTTTTTTTTCCACCCCCCCCCCGAGTAGGACCTTCCCCTGA
ACTAACTTTGAATAAAAATCAGGAATCTGCTTTGGCAATAAGATGCTCTG
GTGTTGTCTAGATGTTTGCACTTTCAGATTATTTAGAGCTAATGATGTGC
CAGGTTCTCTTGCAATAAGTCTAGAACTGTGATTTGCAGCCTGTGGGGAA
TGACCCCTTTGGTGGGTCAAATGACTCTTTCACAAGAGTTGCATACACTA
TCCTTATTCTACATACCAGATAGTTACATAAGGATTCATAACAGTAGCAT
AATTACAGTTATGAAGTAGCAATGACAACAGTTTTATTGGTTGGCAGTCA
CCATAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_p07.g1 MSMg01no173_p07.g1 CHROMAT_FILE:
MSMg01no173_p07.g1 PHD_FILE: MSMg01no173_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:43 2005
         (234 letters)



>mm_chr4_81275058_81275687
          Length = 630

 Score =  395 bits (204), Expect = e-114
 Identities = 225/234 (96%), Gaps = 4/234 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaaacagcgatctctggttaatggggatccaacgttatgctctactttctggaagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaaacagcgatctctggttaatggggatccaacgttatgctctactttctggaagcct 260

                                                                       
Query: 61  aaaacgcttaatctgagaacgtgtttggcatagtgtaagcacatcgtgaatttgctatta 120
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 261 aaaacgcttaatccaagaacgtgtttggcatagtgtaagcacatcgtgaatttgctat-- 318

                                                                       
Query: 121 ttatcacaactcttacaataaaattgtacagagtcacttctctatgattgcttttctata 180
             |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 319 --atcacaactcttgcaataaaattgtacagagacacttctctatgattgcttttctgta 376

                                                                 
Query: 181 gatgttccacactgtcttttgagcaactagggggtgactttaaacaccctgtat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatgttccacactgtcttttgagcaactagggggtgactttaaacaccctgtat 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 630
Length adjustment: 9
Effective length of query: 225
Effective length of database: 621
Effective search space:   139725
Effective search space used:   139725
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)