BAC Information

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BAC

Clone NameMSMg01-174C21
Chromosome4 (Build37)
Map Location 19,785,846 - 19,786,161
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13
Downstream geneAtp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174C21.T7 (MSMg01no174_c21.b1)MSMg01-174C21.TJ (MSMg01no174_c21.g1)
ACCAG369556AG369557
length744748
length of high quality
(start - end)
320 (46 - 365)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no174_c21.b1 PHD_FILE: MSMg01no174_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:59 2005CHROMAT_FILE: MSMg01no174_c21.g1 PHD_FILE: MSMg01no174_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATATTTAAGTGATGAAAACCGTTCATTGGTTTGTTTCTAGCTGA
TACATCTTTCTGTTGAATGCTGAGAAGCCTGGCTCTTTTCCCCCCTCTCC
CCCAGTCACCATGCGCAGTGACTACTGTGCTTAAGGCAGATCTCGGGTCT
CACTTTTACCTCCTTTGGAGCAGTGGTCAGTTGCAGTGCTGACAAAGTTA
TTGCCCAGATGGGATTTGTTCACTCAACAAACCAAAGAACAAAAAGGATT
AAATGCTACCTAATAATTAAGAGAGATTAGCAGCACACAGTAAACACGAG
ACTCCCTAAACACTTATTTATGGACCTNTCGATCCACACTCCTCTCACTC
CATAACATCCTGTCTGTACATCAGTTCATAAAGAAAAGAAAGGTCAGTGA
CTTTGAGTGGGTCAGAAACATTGGACTAAGCAAGTCCAAGGGCTTTGGAA
TTAACCATAGATGCTGTTTGCAAAGATTTGAAATAATTTCTATCCTAATT
CATTCCTTATCATCTGGTTTTTGCTCCTTAATATATCCATTGATTGTTAC
GCTGATAGCATCTGCTCCAATCTGCTGACTTGAACACTTTGAAAGAGATC
TCATATAATTAGTTGAATAAACAACCGTGCAGGCAGCATAAATCTCTCAT
GATAATTCACTCTTCCCTTTCTCTTCTTTTAATGAACTCAATCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCTTTTCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATATTACTACCGGAGGATCCAGC
AATACCTCTCCTGGTTTTATTTCCAGAACATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAA
ACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGCACACTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_c21.b1 MSMg01no174_c21.b1 CHROMAT_FILE:
MSMg01no174_c21.b1 PHD_FILE: MSMg01no174_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:59 2005
         (320 letters)



>mm_chr4_19785642_19786361
          Length = 720

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatttaagtgatgaaaaccgttcattggtttgtttctagctgatacatcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatttaagtgatgaaaaccgttcattggtttgtttctagctgatacatcttt 264

                                                                       
Query: 65  ctgttgaatgctgag-aagcctggctcttttcccccctctcccccagtcaccatgcgcag 123
           ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ctgttgaatgctgagcaa-cctggctctttccccccctctcccccagtcaccatgcgcag 323

                                                                       
Query: 124 tgactactgtgcttaaggcagatctcgggtctcacttttacctcctttggagcagtggtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgactactgtgcttaaggcagatctcgggtctcacttttacctcctttggagcagtggtc 383

                                                                       
Query: 184 agttgcagtgctgacaaagttattgcccagatgggatttgttcactcaacaaaccaaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttgcagtgctgacaaagttattgcccagatgggatttgttcactcaacaaaccaaaga 443

                                                                       
Query: 244 acaaaaaggattaaatgctacctaataattaagagagattagcagcacacagtaaacacg 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 acaaaaaggattaaatgctacctaataattaagagagattggcagcacacagtaaacacg 503

                            
Query: 304 agactccctaaacactt 320
           ||||||||| |||||||
Sbjct: 504 agactccctgaacactt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)