Query= MSMg01no174_d20.b1 MSMg01no174_d20.b1 CHROMAT_FILE:
MSMg01no174_d20.b1 PHD_FILE: MSMg01no174_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:03 2005
(320 letters)
>mm_chr4_19279899_19280618
Length = 720
Score = 565 bits (292), Expect = e-165
Identities = 310/316 (98%)
Strand = Plus / Plus
Query: 5 gaattcaagacatcttcgatcatgttttagcagtgttggggattgctatgccttaacagc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagacatcttccatcatgttttagcagtgttggggattgctatgccttaacagc 264
Query: 65 aggaaaaagattctcaccttctctctgtgtgtttcttcttctgtgtagtaagggcttcgg 124
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaaaaagagcctcaccttctctctgtgtgtttcttcttctgtgtagtaagggcttcgg 324
Query: 125 gacagggattagctctcaaggaagttttagcttgtataataagagaatgagtcgaccctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacagggattagctctcaaggaagttttagcttgtataataagagaatgagtcgaccctc 384
Query: 185 aggctgagatgacatcacaaagctcagcttctactcatgttcttctgggctagcaaaaca 244
||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 385 aggttgagatgacatcacaaagctcagcttctactcatgttcttccgtgctagcaaaaca 444
Query: 245 accaatgtctttcactggcttcccctcctgttacattgccttgtaaaccattttcctagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accaatgtctttcactggcttcccctcctgttacattgccttgtaaaccattttcctagt 504
Query: 305 atagtagctttctgtg 320
||||||||||||||||
Sbjct: 505 atagtagctttctgtg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_d20.g1 MSMg01no174_d20.g1 CHROMAT_FILE:
MSMg01no174_d20.g1 PHD_FILE: MSMg01no174_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:03 2005
(291 letters)
>mm_chr4_19423471_19424161
Length = 691
Score = 497 bits (257), Expect = e-145
Identities = 287/305 (94%), Gaps = 14/305 (4%)
Strand = Plus / Minus
Query: 1 ttaaccctcatttgttatatgggattacacactcagagctgagtgcaggaattgaagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 ttaaccctcatttgttatatgggattacacactcagagctgagtgcaggaactgaagtac 254
Query: 61 ttctgtgagcatatcagagacacgatgtattcagaaaaaagtcagctaccaatttgg--- 117
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 253 ttctgtgagcatatcagagacacgatgtattcagaaaaaagtcagctaccaatatggata 194
Query: 118 ---acacacacacacacaca--------cacactcacacacatacacagacctgttgccc 166
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 193 cacacacacacacacacacactcacactcacactcacacacatacacagacctgttgccc 134
Query: 167 atttcctgacattcatgtattagaaaaccattcctatattgaaacattattagtatttgg 226
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 133 atttcctaacattcatgtattagaaaaccattcctaaattgaaacattattagtatttgg 74
Query: 227 aagtggagccttggggagctaatgaggtcatgagggcattaaaataaggagcttccagta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 aagtggagccttggggagctaatgaggtcatgagggcattaaaataaggagcttccagta 14
Query: 287 gggtg 291
|||||
Sbjct: 13 gggtg 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
