Query= MSMg01no174_n18.b1 MSMg01no174_n18.b1 CHROMAT_FILE:
MSMg01no174_n18.b1 PHD_FILE: MSMg01no174_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:49 2005
(321 letters)
>mm_chr4_36626979_36627699
Length = 721
Score = 600 bits (310), Expect = e-176
Identities = 316/318 (99%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatgtatatcagtcttgtttttggtttttgttcctttttttctttttgttttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgtatatcagtcttgtttttggtttttgttcctttttttctttttgttttg 264
Query: 65 ttttagaagagaaagaaaaaaaaaaaaac-accatttggttagtaaggtaggtagaatcc 123
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 265 ttttagaagagaaagaaaaaaaaaaaaaccaccatt-ggttagtaaggtaggtagaatcc 323
Query: 124 aagagatcatgagaagtgaagacataatcaaaacatattggatggaaaatatgattaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagagatcatgagaagtgaagacataatcaaaacatattggatggaaaatatgattaaac 383
Query: 184 aggttcagagagttgtggaagatataaaatattaacgtgtgccatattcatgtgaatcta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggttcagagagttgtggaagatataaaatattaacgtgtgccatattcatgtgaatcta 443
Query: 244 tagatgcacacacaccaacacacatacataagcataaacacataaactgcaggaacagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagatgcacacacaccaacacacatacataagcataaacacataaactgcaggaacagaa 503
Query: 304 attagatgaagtaaaata 321
||||||||||||||||||
Sbjct: 504 attagatgaagtaaaata 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_n18.g1 MSMg01no174_n18.g1 CHROMAT_FILE:
MSMg01no174_n18.g1 PHD_FILE: MSMg01no174_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:49 2005
(549 letters)
>mm_chr4_36687705_36688657
Length = 953
Score = 977 bits (505), Expect = 0.0
Identities = 538/555 (96%), Gaps = 12/555 (2%)
Strand = Plus / Minus
Query: 3 tgtaaatttgttaatttgtcctgttttattctttgtatataaggtttggaagattgttca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgtaaatttgttaatttgtcctgttttattctttgtatataaggtttggaagattgttca 694
Query: 63 tgtgatgcgataaatatggcaatttttcattattagtatatttatgttttacacttggac 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgtgatgtgataaatatggcaatttttcattattagtatatttatgttttacacttggac 634
Query: 123 tatgaaatgatacaatgctacaattctctgataaatttcttctaaaaaattatgttattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tatgaaatgatacaatgctacaattctctgataaatttcttctaaaaaattatgttattg 574
Query: 183 ccagactctggccagattttttgtgactaattcaacaatctgccagtgagcctcccatat 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccagactctggctagattttttgtgactaattcaacaatctgccagtgagcctcccatat 514
Query: 243 atttttgtattctgggttaatgagaattgattgactcttccatttc-----ttttttttt 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 513 atttttgtattctgggttaatgagaattgattgactcttccatttcgttttttttttttt 454
Query: 298 tcccctc---ctctctttcttcttttttttcccatcaaatctcagctcaccaaagtgcag 354
| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 453 t----tctttctctctttcttcttttttttcccatcaaatctcagctcagtaaagtgcag 398
Query: 355 gctggcaaagaaactctttctttttgagggcttttttgaaatgcaagcagcgtttggttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctggcaaagaaactctttctttttgagggcttttttgaaatgcaagcagcgtttggttt 338
Query: 415 cattttttagagagctcagcatttttatgactgaacatcaatatcttacataacagatgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cattttttagagagctcagcatttttatgactgaacatcaatatcttacataacagatgt 278
Query: 475 gatcctaccaatgttgtgagatggtttctctatagataacatagtcggcaatttaccatg 534
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 277 gatcctaccaatgttgtgagatggtttctctatagataacatagttggcaatttaccatg 218
Query: 535 atgctgtctttttat 549
|||||||||||||||
Sbjct: 217 atgctgtctttttat 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 953
Length adjustment: 10
Effective length of query: 539
Effective length of database: 943
Effective search space: 508277
Effective search space used: 508277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
