BAC Information

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BAC

Clone NameMSMg01-175D22
Chromosome4 (Build37)
Map Location 35,696,920 - 35,697,051
singlet/doubletsinglet
Overlap geneLingo2
Upstream geneGm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175D22.T7 (MSMg01no175_d22.b1)MSMg01-175D22.TJ (MSMg01no175_d22.g1)
ACCAG370292AG370293
length699737
length of high quality
(start - end)
313 (37 - 349)234 (88 - 321)
definitionCHROMAT_FILE: MSMg01no175_d22.b1 PHD_FILE: MSMg01no175_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:17 2005CHROMAT_FILE: MSMg01no175_d22.g1 PHD_FILE: MSMg01no175_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAG
GTTTATAATGCATTAACCAACATTCAAATTTCATCTCAACTCTTTGCTGG
CTGTGAGATTTTGGACAATATAATGTTTGTAAAACATACACTTCTCTAAT
AAATGGGATGGTTCTAATTTCAGATCAGCCACAAGAACAGAATGCCAACT
CTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCT
TAATATCAATGGACTAAATTCCCCAATAAAAAGACATAGACTAACAGACT
GGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTT
TTTTTATTAAGACACCACACTACCTCAGAGTGAAAGGCTGGAAAACAATT
TTCCAAGCAAATGGAATGAAAAAACAAGCTGGAGTAGCCATTTTAATATC
GGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGAC
ACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTG
AATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTT
AGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACT
TCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAA
CCCGGGGCACCGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCT
GAGCCCCATTTTTTAATGGGGTTATTTGATCTTCTGAAGTCCACCTTCTT
GAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGG
TAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTG
TCTTTTGCCTTGCTTATGCTTTGTAATTATATGAGGCCCCATTTGTCGAT
CTTACAGCACAAGCCATTGCTGCCCTATTTTTTTTTTTCCCCCTGGGCCC
ATATCTTTGAGGGTTTTTTGNATGGTTTTAAAAACGAGACCCTGTGTTTT
TGTTTTTATGTGGAATTNNTTANNCCACAAAGNTTAGNCCTTAAANCGGG
GGGGGAGGGGTGGATCAATTAGCATTCTTCTACGTGATAACTCCCAGTTG
TGCCAGCACCATTTGCTGAACATGCTGCCATTTTTCCACTGGACGGATTT
TGCTCCCTTGTCCCCGATCACGGGACCATAGGCGTGTGGGTTCATTTCTG
GGACTTCCATTGGATTCCCTTGGCCTACTTTTATGCTGCTATACCGCTAC
CCTGCCGGGCTTTTTTTTTCTCTTTCCTCTCTCCTCTTCCACCCCAATCG
CCCCCGCTCCCACCGCCTTTCGGCCCGGGGTCGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_d22.b1 MSMg01no175_d22.b1 CHROMAT_FILE:
MSMg01no175_d22.b1 PHD_FILE: MSMg01no175_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:17 2005
         (313 letters)



>mm_chr4_35696713_35697425
          Length = 713

 Score =  248 bits (128), Expect = 4e-70
 Identities = 131/132 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  acaggtttataatgcattaaccaacattcaaatttcatctcaactctttgctggctgtga 70
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acaggcttataatgcattaaccaacattcaaatttcatctcaactctttgctggctgtga 280

                                                                       
Query: 71  gattttggacaatataatgtttgtaaaacatacacttctctaataaatgggatggttcta 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gattttggacaatataatgtttgtaaaacatacacttctctaataaatgggatggttcta 220

                       
Query: 131 atttcagatcag 142
           ||||||||||||
Sbjct: 219 atttcagatcag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)