BAC Information

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BAC

Clone NameMSMg01-176A08
Chromosome4 (Build37)
Map Location 71,058,212 - 71,058,923
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176A08.T7 (MSMg01no176_a08.b1)MSMg01-176A08.TJ (MSMg01no176_a08.g1)
ACCAG370842AG370843
length1,2551,234
length of high quality
(start - end)
442 (90 - 531)712 (83 - 794)
definitionCHROMAT_FILE: MSMg01no176_a08.b1 PHD_FILE: MSMg01no176_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:15 2005CHROMAT_FILE: MSMg01no176_a08.g1 PHD_FILE: MSMg01no176_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATTCTTTNNNNTACATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCACTTACAAAAAGGAATCCCCATTTATTCTGGCCTAGTGAGTT
TAGAGACATCGAAGACCCTTAGATCACAAATTGTTCTATAATTTTGTTGA
AAATACTTAGTGGCCCTTCAAGTTGAGAATCTTCATGCTCTTCTATACCT
GTTAACCTTGGGTTTGGTCTTCTCATTGTGTCCTGGATTTTCTGGATGTT
CTGGGTTAGGGGTCTTTTGCATTTTGCATTTTCTTTGACTGTTGTGGCAA
GGTTTTCTATGATATCATCTTCTATACCTGAAAGTCTCTCTTCTATCTCT
TGTATTCTGTTGGTGATGTTTACACCTATGACTACTGATCTCTTTCCTAG
ATTTTCTATTTCCAGGGTTGTCTCCCTTTGTGATATCTTTATTGTTTCTA
TTTCCATTTTTAGATCCTGGATGGTTTTGTTTAATTCCTTCACCTGTTTG
ATTGTGTTTTCCTGTAAATCTTGTAAGGGATTTTGTGTGTGTGTGTGTGT
GTGTGTGTTTATACCTCTTGTATTGCTCATTATCTCTTGTATCTCTTGAT
TCTTTTTTTTTCTATTTTCATTTCTTTCTCCTATTATTTATACCTTCTTT
GTTTTTTTCTCTCCTTACTAACTTACTATTCCTTTTTTCTATCTATTTAT
TATGTCTTTATTTCTTTCTTCTTATTTAATTTTTTACATTTACTTTTATC
TTCTTCTTTTTTCCTTTCTTTTACTTCTTATATTTTTTTTTTTTTTTTTT
CCTCCTTCTTTTTTATTCTTTCTCTTCTTTCTTCTTTTCTTTTTTTTCTC
TTCTATATCTTCACTTTTTATTTATTTTTATTTCTTTATTTCCTTTCTCG
TTTCTTCTTCCTCTTTTTTTTTTCTGCTTCTTATTTATTTTCTTCTTCTT
TTTGTTTCTTTTTTAATTATTTCTTTTCTTTTTCTATTTCTATCTTTTAA
TTTTTTTTTCTCTTTTTATCTACTTTTTTTTACTATTCTTCTTCTTTCTC
CTTTTCTTCTCCTCTAATTATCCTTTTTATTTTTATCTACTCTTTTTTCT
TTCCTATCTATTTTATTCTCCTCTTCTTTTATTGTTATTTCTTCTTCTTT
TTCTCTACCTCTCTTTCTGTATTCCTTCTTATTTCTTCTCTCTCCTTCTT
TTCTTTTCATTTATTACTCTTCATTTTCTCTTTCACTTTTTATTTTCTTT
ATATT
TTTTTTAACAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCTAAACCACTGTTTGTGAATCAACCATTT
TATCAACTGGCCTATATCCTCAGTCTCTTAACTTTTACAGTAGAAAATTA
TAACTGATTATAATGACATAAAATTATAAACAATAAATTTGTAGTATTTG
TATCATATTATATATAGTTTATATTGTGTGTCTTATATATAATATTTTGA
TTATATAGTTTAATGACTTATACTTGCATATCTCCTAAGTATACATTTTT
ACTTAAAATGTTTTTATTATAATTTCAAATATGCTCCCCAAATGTATTTT
TAGAAATAACCAATCTCACAGGATTTTTTTTCTAACGATGAAAACTTTTA
TGATTTTGTGTAAGGATATGGGAAACAAAAATGCTTTATATGTACCTTTT
AAATAATTTAATTAAGTAATAATATTATTCCTCATCTGTACTAAGCTAAG
ATTCTCCAGAAATCAAAACACTGGATAAGACTCAAGGCATAGCTGTATTC
TTGTTTGTGTGATTTTAGGAGTAAAGAGACCCTAAGTCTGCAAATATACT
TTCTGTTAACACCTACCTAAAAACACGTTTAAAAAGAAAGGTTTGGTTCT
TTGCCTGTTTTTTTCTTATTCTCCTATCAAGTCCATCTAGCTTGCTATGG
AGAGATTATATTTCTATTGGGACTACAATATAGACGATAGATCATTTGAG
TTATCCAGCCTTGTGGATTGAATGACTACCAGATTCTTAACCTTTCTATT
GAATAACAGACACTACTTGATTATCCAGATTGTAGCCTATAAGCCAACTA
AAATTTTTCATATGTATGTTATATTAATATATATAATCATATTATATATC
ATATATTAACATGTATCCTAAAATGCCTATATATTAATACATGTTAAACC
TTTATATTATGCCTAATTATAATATTACCATAATCTTAATATGGCCCCGC
CCCAAGGATAATTTCCCTCCCTGGAAAANAACTTTCTCTTTATAACTAAC
CCTCCCCCAAATGGAAATTGGATATTGGGTGGCGGTCGTTTTAAAAACCT
TTTCTTAACAACTTTAATCGCGGGGATTTTGAATTTTCTCCCTCCTGCGT
ATAATAAAAATCTCTTTTTTTCCCCCAATATGGTGTTCTCTGCATCTTTT
TCCTCACATTCTTCTCCTATAGTCTTTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_a08.g1 MSMg01no176_a08.g1 CHROMAT_FILE:
MSMg01no176_a08.g1 PHD_FILE: MSMg01no176_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:15 2005
         (712 letters)



>mm_chr4_71058012_71059123
          Length = 1112

 Score = 1278 bits (661), Expect = 0.0
 Identities = 700/713 (98%), Gaps = 2/713 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgaatcaaccattttatcaactg-gcctatatcctcagtctcttaacttttacagt 59
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgaatcaaccattttatcaactgtg-ctatatcctcagtctcttaacttttacagt 259

                                                                       
Query: 60  agaaaattataactgattataatgacataaaattataaacaataaatttgtagtatttgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaaaattataactgattataatgacataaaattataaacaataaatttgtagtatttgt 319

                                                                       
Query: 120 atcatattatatatagtttatattgtgtgtcttatatataatattttgattatatagttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 atcatattatatatagtttatattgtgtgtcttatatataatattttgattatatatttt 379

                                                                       
Query: 180 aatgacttatacttgcatatctcctaagtatacatttttacttaaaatgtttttattata 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatgtcttatacttgcatatctcctaagtatacatttttacttaaaatgtttttattata 439

                                                                       
Query: 240 atttcaaatatgctccccaaatgtatttttagaaataaccaatctcacaggatttttttt 299
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 440 atttcaaatatgctccccaaatttatttttagaaatagccaatctcacaggatttttttt 499

                                                                       
Query: 300 ctaacgatgaaaacttttatgattttgtgtaaggatatgggaaacaaaaatgctttatat 359
           ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaacgatgaaaacttttaggaggttgtgtaaggatatgggaaacaaaaatgctttatat 559

                                                                       
Query: 360 gtaccttttaaataatttaattaagtaataatattattcctcatctgtactaagctaaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtaccttttaaataatttaattaagtaataatattattcctcatctgtactaagctaaga 619

                                                                       
Query: 420 ttctccagaaatcaaaacactggataagactcaaggcatagctgtattcttgtttgtgtg 479
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 620 ttctccagaaatcaaaacactggataaaactcaagacatagctgtattcttgtttgtgtg 679

                                                                       
Query: 480 attttaggagtaaagagaccctaagtctgcaaatatactttctgttaacacctacctaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attttaggagtaaagagaccctaagtctgcaaatatactttctgttaacacctacctaaa 739

                                                                       
Query: 540 aacacgtttaaaaagaaaggtttggttctttgcctgtttttttcttattctcctatcaag 599
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacaggtttaaaaagaaaggtttggttctttgcctgtttttttcttattctcctatcaag 799

                                                                       
Query: 600 tccatctagcttgctatggagagattatatttctattgggactacaatatagacgataga 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 800 tccatctagcttgctatggagagattatatttctattgggactacaatatagatgataga 859

                                                                
Query: 660 tcatttgagttatccagccttgtggattgaatgactaccagattcttaacctt 712
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tcatttgagttatccagccttgtggattgaatgactaccagattcttaacctt 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)