Query= MSMg01no176_b11.b1 MSMg01no176_b11.b1 CHROMAT_FILE:
MSMg01no176_b11.b1 PHD_FILE: MSMg01no176_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:25 2005
(617 letters)
>mm_chr4_84122191_84123206
Length = 1016
Score = 1110 bits (574), Expect = 0.0
Identities = 609/626 (97%), Gaps = 10/626 (1%)
Strand = Plus / Plus
Query: 1 gaagagtcaatatacagaatacagactgagttgccttattaacaagaatttccacccctc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 192 gaagagtcaatatacagaatacagactgagttgtcttattaacaagaatttccacccctc 251
Query: 61 tggggtgatgtctctgggaagaacagatgacaagagatttatgatggcttgatctaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tggggtgatgtctctgggaagaacagatgacaagagatttatgatggcttgatctaagtg 311
Query: 121 caactgtaacaagattttttttgtaataagaaggaaatgttcaggctagatgatcaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caactgtaacaagattttttttgtaataagaaggaaatgttcaggctagatgatcaaata 371
Query: 181 gactttgacaaaaaaatgacaagtaagatatagccagcacactgttttgtggatgcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gactttgacaaaaaaatgacaagtaagatatagccagcacactgttttgtggatgcccct 431
Query: 241 catttgaatttgtctatgtataaagagaaagccaacctgacctcttctgcagggttaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 432 catttgaatttgtctatgtataaagagaaagccaacctgacctcttctgcaggattaaag 491
Query: 301 gaatcctagagatttagacta---------atacacctttcaagttcacttatagatgag 351
||||||||||||||||||||| ||||| | ||||||||||||||||| |||
Sbjct: 492 gaatcctagagatttagactatttgtactaatacatcagtcaagttcacttatagacgag 551
Query: 352 ctatactgttctactgcaagaactatattctcaacttttcagcaagctccaatgtatgaa 411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 552 ctatactgttctactgcaagaactatattcccaacttttcagcaagctccaatgtatgaa 611
Query: 412 acatttaatacattgctgatgtgaatatgcccaccaatgaagaaatattggcagaaaatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acatttaatacattgctgatgtgaatatgcccaccaatgaagaaatattggcagaaaatt 671
Query: 472 tgaatactaaaagtcagtcaccatgaagaatccatgagattgcctttgaagataggactg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgaatactaaaagtcagtcaccatgaagaatccatgagattgcctttgaagataggactg 731
Query: 532 tgggattttgctaataaaccccacaaaaattctattttcaaatacacgtggtcattattt 591
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 732 tgggattttgctaataaaccccacaaaa-ttctattttcaaatacacgtggtcattattt 790
Query: 592 ttctcagcaatagccaaagagaaatg 617
||||||||||||||||||||||||||
Sbjct: 791 ttctcagcaatagccaaagagaaatg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space: 610642
Effective search space used: 610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_b11.g1 MSMg01no176_b11.g1 CHROMAT_FILE:
MSMg01no176_b11.g1 PHD_FILE: MSMg01no176_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:25 2005
(331 letters)
>mm_chr4_84287128_84287858
Length = 731
Score = 609 bits (315), Expect = e-179
Identities = 327/331 (98%)
Strand = Plus / Minus
Query: 1 accatgtgagaaactggacagttgccatttgaagatagggagagaagttgccagcaccag 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct: 531 accatgtgagaaactggacagttgccattcgaagatagggagagaagttgccagtagcag 472
Query: 61 agagagggtggagcactgtttgccttctctcctccagacacatagtagggtcatgttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agagagggtggagcactgtttgccttctctcctccagacacatagtagggtcatgttggg 412
Query: 121 caaatgaccaaccattccttaagcctgattccttgtttgtgtggagaagatatttgaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caaatgaccaaccattccttaagcctgattccttgtttgtgtggagaagatatttgaaca 352
Query: 181 aggtctcaagttttgttcagcgttttcttccatttaaattctatatgggaagtatttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggtctcaagttttgttcagcgttttcttccatttaaattctatatgggaagtatttaaa 292
Query: 241 attgaggaattattgaaaatatttttcttagaaattagtattgctatgctttgtcttaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attgaggaattattgaaaatatttttcttagaaattagtattgctatgctttgtcttaag 232
Query: 301 ggttccaaagatcctagctcacttgttttat 331
|||||||||||| ||||||||||||||||||
Sbjct: 231 ggttccaaagattctagctcacttgttttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
