Query= MSMg01no176_d03.b1 MSMg01no176_d03.b1 CHROMAT_FILE:
MSMg01no176_d03.b1 PHD_FILE: MSMg01no176_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:39 2005
(787 letters)
>mm_chr4_151735335_151736521
Length = 1187
Score = 1421 bits (735), Expect = 0.0
Identities = 774/787 (98%)
Strand = Plus / Plus
Query: 1 cacagtagcttgcctgagaccatgccacattagacctttccacttggatttgggtccctg 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cacagtagcttgcctgagaccatgccacagcagacctttccacttggatttgggtccctg 260
Query: 61 agtcaccctgggcatggtgtccctaggctttgacagagtgatgaccccacagtctggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaccctgggcatggtgtccctaggctttgacagagtgatgaccccacagtctggagt 320
Query: 121 ttcagtttatgaaggcaggggacaacattctctcctcatcccttgactacggacactgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagtttatgaaggcaggggacaacattctctcctcatcccttgactacggacactgta 380
Query: 181 ggcagctgaaggtcccatgtgtggacttgctctgtctcccagtgctgggtatcctatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcagctgaaggtcccatgtgtggacttgctctgtctcccagtgctgggtatcctatccc 440
Query: 241 ataggttctgggctgtcctgcagcttccctgacttgtgtatgcatctgggctcctgccgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggttctgggctgtcctgcagcttccctgacttgtgtatgcatctgggctcctgccgt 500
Query: 301 gtgtgggcttcgcatgtgtgccagtgtatctatgtccttggtggtgtaggggatggacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgggcttcgcatgtgtgccagtgtatctatgtccttggtggtgtaggggatggacag 560
Query: 361 gcccctttgatgggcgtagacttcatagctttcctgagaatggggtatagtttcctgatt 420
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gccccttggatgggcgtaggcttcatagctttcctgagaatggggtatagttccctgatt 620
Query: 421 tcctgattcctccttgcaggaggcgaggctgggtgggctaaggcctaggaaatgagttcc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tcctgattcctccttgcaggaggcgaggctgggtgggctaaggtctaggaaatgagttcc 680
Query: 481 tttacacccctcaagtccaagagaatcaccctgccttcccatctcgcctcttcctccttg 540
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tctacacccctcaagtccaagagaatcgccctgccttcccatctcgcctcttcctccttg 740
Query: 541 cactttgccctgagaggccagagtatggttgcttctgggaggtgtggtgtgcgttgcatg 600
| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 cgctttgccctcagaggccagagtatggttgcttctgggaggtgtggtgtgcattgcatg 800
Query: 601 ttggatcacaccggtgctctgatgccaacagtcctctgaggctgaggagaagaggccaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttggatcacaccggtgctctgatgccaacagtcctctgaggctgaggagaagaggccaga 860
Query: 661 tttacaggcaaggagacaggctgaaggggtgtgtactcagatacacagaagttcggcagc 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 861 tttacaggcaaggagacaggctgaaggggtgtgtactcagacacacagaagttcggcagc 920
Query: 721 tgggccgagacctgccctccgctacagaaccctctccctaaatctaccatctctcctcag 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tgggctgagacctgccctccgctacagaaccctctccctaaatctaccatctctcctcag 980
Query: 781 tccagct 787
|||||||
Sbjct: 981 tccagct 987
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 1187
Length adjustment: 10
Effective length of query: 777
Effective length of database: 1177
Effective search space: 914529
Effective search space used: 914529
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no176_d03.g1 MSMg01no176_d03.g1 CHROMAT_FILE:
MSMg01no176_d03.g1 PHD_FILE: MSMg01no176_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:39 2005
(388 letters)
>mm_chr4_151760348_151761136
Length = 789
Score = 520 bits (269), Expect = e-152
Identities = 308/331 (93%), Gaps = 19/331 (5%)
Strand = Plus / Minus
Query: 1 ccccttt-tccgctcccaaagccatcctcacactcaggccctcagacactgcccccaccc 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cccctttctccgctcccaaagccatcctcacactcaggccctcagacactgcccccaccc 336
Query: 60 taccccctgccgccagcttgaacagagactgtgggtatgagacaagcagcaactgtccat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taccccctgccgccagcttgaacagagactgtgggtatgagacaagcagcaactgtccat 276
Query: 120 ggcatggaccatcatgcaggacagtggaggcaggacagggctctaggctgggagcagtga 179
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 275 gggatggaccatcatgcaggacagtggaggcaggacagggctttaggctgggagcagtga 216
Query: 180 tcaatggggccagtgacacacagccaagaacacatgtgcacatacagatgtacacacaca 239
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 215 tcaatggggccagtgacacacagctaagaatacatgtgcacatacagatgtacacac--- 159
Query: 240 catacaca------cacagaaagccatgaccacatggggccaatgacacatggccaagga 293
||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ---acacatacacacacagaaagccatgaccacatggggccaatgacacatggccaagga 102
Query: 294 cacatgtgcacatacagatgtccacacacat 324
|||||||||||||||| |||||||||
Sbjct: 101 cacatgtgcacataca------cacacacat 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space: 295620
Effective search space used: 295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
