Query= MSMg01no176_f07.b1 MSMg01no176_f07.b1 CHROMAT_FILE:
MSMg01no176_f07.b1 PHD_FILE: MSMg01no176_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:57 2005
(702 letters)
>mm_chr4_17857995_17859098
Length = 1104
Score = 1218 bits (630), Expect = 0.0
Identities = 685/704 (97%), Gaps = 2/704 (0%)
Strand = Plus / Plus
Query: 1 ttcatatttcattaagttttacaaaatgccatttaataattgtctcacatttacatgttg 60
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 ttcatatttcattaagttttacaaaatggaaattaataattgtctcacatttacatgttg 260
Query: 61 gcatgatttatttaaaggtatgaacattcttgaatgtttaatattcttaatcttaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgatttatttaaaggtatgaacattcttgaatgtttaatattcttaatcttaatatt 320
Query: 121 tcaagggaagacagatttatagtatcgggtatttagaattgaaactaaagtcatgatact 180
| |||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||
Sbjct: 321 ttaagggaagacagatttttagtatcgagtatttagagttgaaactaaaggcatgatact 380
Query: 181 tatgtccagtcaagtttagaaaacaattataatctagcatgattgtttaaagtgcttaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtccagtcaagtttagaaaacaattataatctagcatgattgtttaaagtgcttaga 440
Query: 241 gtttttatggtttctgattagagtgctactaagctttgattatttctgggagttgggagt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gtttttatggtttctgattagagtgctactaagctttgattatttctgggagtttggagt 500
Query: 301 tggatgctggaattggattgatattctgtaagtcagaaactgtaataggcatttagaata 360
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tggatgctggaattggattgaaattctgtaagtcagaaactgtgataggcatttagaata 560
Query: 361 tacatataaggtatctgctaagacccaattccatttggacatgatgtggacatttctaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatataaggtatctgctaagacccaattccatttggacatgatgtggacatttctaat 620
Query: 421 ataaaat--aaaaaaatggagccatcatacaaaatgcatgttggaaaggaaacattgctt 478
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaaatttaaaaaaatggagccatcatacaaaatgcatgttggaaaggaaacattgctt 680
Query: 479 caagataaaagcgtaaagctcatgttctagctgagcaatgtcgtaacgcttagtcatgct 538
||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 caagataaaagcgaaaatctcatgttctagctgagcaatgtcgtaatgcttagtcatgct 740
Query: 539 gtgatacagctccacctgtcaaatctcttctaccactgttttctcagagaaattgctatt 598
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 741 gtgatacagctccacctgtcaaatctcttccaccactgttttctcagagaacttgctatt 800
Query: 599 gtgggctaccttgactttatggtgttgctttttgcttgcccactccccatagccatttac 658
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 801 gtgggctaccttgactttatggtgttgctttttgcttgcccacttcccatagccatttac 860
Query: 659 tgcagaaggagatagtctggaaaggcacagtacatcaaaaatct 702
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgcagaaggagatagtctggaaaggcacagtacatcaaaaatct 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1104
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1094
Effective search space: 757048
Effective search space used: 757048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no176_f07.g1 MSMg01no176_f07.g1 CHROMAT_FILE:
MSMg01no176_f07.g1 PHD_FILE: MSMg01no176_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:57 2005
(345 letters)
>mm_chr4_18009555_18010298
Length = 744
Score = 609 bits (315), Expect = e-179
Identities = 336/343 (97%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 1 caaagagaatgtattatagaagcaacaacatgtaagtaggaaatgaacagaaagaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caaagagaatgtattatagaagcaacaacatgtaagtaggaaatgaacagaaagaaggca 483
Query: 61 tttaatacgcgcataggcaaaagggcattctcatccaaatgaaataggtatacaaacaag 120
||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 482 tttaata-gggcataggcaaaagggcattctcatccaaatgaaataactatacaaacaag 424
Query: 121 gactgaagcaagggaggaaagagaggaaaattaaaaagagcagtagagacccatgcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gactgaagcaagggaggaaagagaggaaaattaaaaagagcagtagagacccatgcaggt 364
Query: 181 taagaaaggtccaggagatggacagtgtaggccctaagtctaaacgtgaaactagaaaat 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 363 taagaaaggtccaggagatggacagtgtaggccctaagtctaaacgcgaaactagaaaac 304
Query: 241 tctagaaagtctgggaagaaggcagctactgcaaatattgaagaagaaaaaatatgttag 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 303 tctagaaagtctgggaagaaggcagctactgcaaatattaaagaagaaaaaatatgttag 244
Query: 301 gttaagatgtaaatggtcaatgatgaaatacatgtgtgctcta 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gttaagatgtaaatggtcaatgatgaaatacatgtgtgctcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 744
Length adjustment: 9
Effective length of query: 336
Effective length of database: 735
Effective search space: 246960
Effective search space used: 246960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
