BAC Information

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BAC

Clone NameMSMg01-176G04
Chromosome4 (Build37)
Map Location 107,946,023 - 107,946,398
singlet/doubletsinglet
Overlap geneZyg11b
Upstream gene2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a
Downstream geneLOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176G04.T7 (MSMg01no176_g04.b1)MSMg01-176G04.TJ (MSMg01no176_g04.g1)
ACCAG371099AG371100
length1,2581,227
length of high quality
(start - end)
658 (133 - 790)387 (69 - 455)
definitionCHROMAT_FILE: MSMg01no176_g04.b1 PHD_FILE: MSMg01no176_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:04 2005CHROMAT_FILE: MSMg01no176_g04.g1 PHD_FILE: MSMg01no176_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTCTNNNNNNGACATTGCGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTCATAATGGTTCCCTGACCTTTAAAAGTGACGGCTATTATG
GTTGGAAAGACTAAATGAACTTTTTAAGAGCTGCTTCTGCCAAAGAAAAT
TGTAAATCAAAAACAGTATCATATCCCTGCAGGAATTGCAGAACCTAGTG
CCAACATGAAGGACTTGAAAGATGCAGGGATGGTGGTCCCCACCACATCT
CCCTTTAACTCTCCTGTCTGGCCAGTGCAGAAGACAGATGGATTGTGGAG
AATGACAGTTGACTATCAAGAACTCAATCAAGTAGTGACTCTGCAGTTGC
TGTACCAGATGTGGTATCCTTACTTGAGAAGATTAACACACATCTATCAA
ATGTCTTTCTCAATACTTGTCCATAAAGACCACCAGAAGCAACATGCCTT
CAGTTGGCAAGGCCAGAAATATACCTTTACAGTTTTACCTTAAGGATATA
TTAACTCCCTGCTCTGTTATAACTTAATTCAAAGAAGTCTTGGGCCGGGC
AATGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCT
GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG
CCGGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAAAACAAACAAA
ACAACAACAACAAAAAACAAAAAAACAAAAACAAAAAAACCCAGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGATCTT
GATTGTTTCTTCCACAAAAATATTATGCTGGTTTCCATATTGATGACCTT
ATGCTAATTAGAATAAGTGAGCAGGAGGTGGCCACCACTTTGGACTTACT
GCTAATGATTATGCACATATCACGAATTGGGAAAAAAATTCACCAAATTT
CTATAACCTTCTAAGGCCCTCTACTTCATTAATATTCTTAAAACTCCCGC
GTTGTGCTCTATTGCACATAAATTCCCTTCTAAGCGAAAATCATAGTTTT
TGTTACCAGGCCCTCTCCCCTTATCCAGGTAAATTCCTTTCCCTTTGGTC
CCTATTTTTTTCCTCAAAGTGTCCCCCTCCCCTTCCCTGTGGGTTTTATT
CTCTCCCTCATTTACCCAAATAACATCCATATATCTTCCTCACTTTAAGC
TTTACCTCAATTTCATTCTCCTCTCTTTCTTACATCCTCTCAATTACTAT
TTCTTCTA
NNNNTTATCAAGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTGGACATGCTCAGCTACAGCCTGAAGCCA
GCCTGGACTCCTTGAGATTCTGTTTCACAAAAACAGAAGCAAAATAGGGA
AATTAGTACCTGTGCTATGTATCATCAAAAACATCAGTGCATTTATTTAA
GTTTTGTCTGTGTACGGGCTTTGCTTATTTGTTTACTTGAGGCAGTTTCA
TGTATCTTAGACTGCCTTTGAACTCCTGATCTTCCTACCACTACAGGCCC
GTGCTATCATTCTAGATTTAAAAATAGTAATAAAAAATTTAACCAACTTT
ATTCTAGTCTGAAAAAAATCAGAATAGAGTATAAGATAACAGAAACAAAC
TCTTATAATGTCCCCAATGATAATATTAAAATATAAGTACAGTTATCCAT
CCAATAATACTTTCTGTCCAATTGTGCCATTTTATATAATTAACCATAAT
TTCCTTTACTCCTCACCCTCACTTAAAAAAAACCTTTTTATAGTATTTAT
TCTGTATGTTTTAAGTATGTTTTGTATTCCCTTGTGTGTATGACATGGTG
TGTAGGCAGAAGTCAGAAGACAATTTGCTAGAAACATCAGGTACTAAAAG
TAATAAAACTGCTCTAATTCCTCGGTGGCAGACCTGGTGACTTCAGAATC
TCTAAGTAATGAGATCTATGCCTTTGACAAGTGCAAGAAGCACCCTTTAA
GGCTGATGCTTAACACTGTCTTAAAAGGAACAAAGTGCATGCAGATCCTT
TGGTTCCCTTGTTACAAGACCCTGAAGAAGTAAAACTGCATCTTAAAAAT
GAAGAAGCAACTTCTCCACAGGTACTGGGGTTGGCTGCTAAGACTGCTAG
AATGAACTTGAACTGTAATCATATCATACTAAGCAATTCCACTAGTTATT
CTGACTTCCGCTGGTCCTCTATCTCTGGAGGACAGGATAACTTTATTACT
TTAGGAAGCTGCTGTCAGGAATGAAGGAGCTGTTTAAATGCCTGAAACAA
ACCCCTTCCCCGAAAAAAGGAAAACCCAAATTCCAGGTACCTTAAAAAAA
AAGGTGGAACCCCAATAATGGGGGTGTTTCCTTTAACCCCCCACCTTTGT
TAGGCAAACTCCCTTAAATCGTATTTTTTATGTCCCCCCTGTTTTCAACA
TAAAATTTTCCCTAAAATACTGGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_g04.g1 MSMg01no176_g04.g1 CHROMAT_FILE:
MSMg01no176_g04.g1 PHD_FILE: MSMg01no176_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:04 2005
         (387 letters)



>mm_chr4_107945816_107946602
          Length = 787

 Score =  673 bits (348), Expect = 0.0
 Identities = 369/376 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   catgctcagctacagcctgaagccagcctggactccttgagattctgtttcacaaaaaca 67
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 208 catgctcagctacagcctgaagccagcctggactacatgagattctgtttcacaaaaaca 267

                                                                       
Query: 68  gaagcaaaatagggaaattagtacctgtgctatgtatcatcaaaaacatcagtgcattta 127
           |||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 268 gaagcaaaatagggaagttagtacctgtgctatgtatcatcaaaaacaaaagtgcattta 327

                                                                       
Query: 128 tttaagttttgtctgtgtacgggctttgcttatttgtttacttgaggcagtttcatgtat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttaagttttgtctgtgtacgggctttgcttatttgtttacttgaggcagtttcatgtat 387

                                                                       
Query: 188 cttagactgcctttgaactcctgatcttcctaccactacaggcccgtgctatcattctag 247
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 388 cttagactgcctttgaactcctgatcttcctaccactacaggccagtgctatcattctag 447

                                                                       
Query: 248 atttaaaaatagtaataaaaaatttaaccaactttattctagtctgaaaaaaatcagaat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atttaaaaatagtaataaaaaatttaaccaactttattctagtctgaaaaaaatcagaat 507

                                                                       
Query: 308 agagtataagataacagaaacaaactcttataatgtccccaatgataatattaaaatata 367
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 508 agagtataagataacagaaacaaactcttaaaatgtccccaatgataatattaaaatata 567

                           
Query: 368 agtacagttatccatc 383
           ||||||||||||||||
Sbjct: 568 agtacagttatccatc 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)