Query= MSMg01no176_h17.b1 MSMg01no176_h17.b1 CHROMAT_FILE:
MSMg01no176_h17.b1 PHD_FILE: MSMg01no176_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:17 2005
(679 letters)
>mm_chr4_4615961_4617039
Length = 1079
Score = 1214 bits (628), Expect = 0.0
Identities = 667/680 (98%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 1 aattatatttgagttttccgggctctttcgcttcctttctacaaacattaatctgttaat 60
|||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 201 aattatatttgagttttccgggctcttttgtttcctttctacaaacattaatttgttaat 260
Query: 61 gttcatcttaaaagatcatggctaaaacagatcattactgcagatgtgggctcatctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcatcttaaaagatcatggctaaaacagatcattactgcagatgtgggctcatctggg 320
Query: 121 tgtagaacagcatagtatggaatccactttagtgtttaatagctgagtttattgatagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagaacagcatagtatggaatccactttagtgtttaatagctgagtttattgatagct 380
Query: 181 gatcctcacttcctttacctgattaacagaaaaaaa-cctgaacagaaaatactgaaagc 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gatcctcacttcctttacctgattaacagaaaaaaaacctgaacagaaaatactgaaagc 440
Query: 240 attactttgaagataaataactcatggatatctcaaatggttgcctagttttttttaaac 299
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct: 441 attactttgaagataaataattcatggatatcttaaatggttgcctagttttttt-aaac 499
Query: 300 tatagatgctgagttatgtcacatctatgtttttttgacagttctgaggactaaacccat 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatagatgctgagttatgtcacaactatgtttttttgacagttctgaggactaaacccat 559
Query: 360 ggccttggcagtgctaagcaagtcatatgcctcagagctaattctccagtctcacttctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggccttggcagtgctaagcaagtcatatgcctcagagctaattctccagtctcacttctt 619
Query: 420 tatctatgttgttatttaggttactaatatctacttcatagggcaaagccaactgcaatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatctatgttgttatttaggttactaatatctacttcatagggcaaagccaactgcaatg 679
Query: 480 ctacttgacatatctgttcatattaacattgaatattcaatcagcatttaaatatagatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctacttgacatatctgttcatattaacattgaatattcaatcagcatttaaatatagatt 739
Query: 540 ttaagccattgctgttccaagatgcttcatttcattgggacatggtgcaaaaataaacag 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 ttaagccattgctgttccaagatgtttcatttcattgggacatggtgcaaaaataaacag 799
Query: 600 aatttaacctctgagtcagaggcattagattttgatttcaactctatcacttacaagcta 659
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 800 aatttaacctctgagtcagaggcactatattttgatttcaactctatcacttacaagcta 859
Query: 660 tctggacattggagccggta 679
||||||| ||||||| ||||
Sbjct: 860 tctggacgttggagcgggta 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_h17.g1 MSMg01no176_h17.g1 CHROMAT_FILE:
MSMg01no176_h17.g1 PHD_FILE: MSMg01no176_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:17 2005
(384 letters)
>mm_chr4_4720290_4721073
Length = 784
Score = 646 bits (334), Expect = 0.0
Identities = 337/338 (99%)
Strand = Plus / Minus
Query: 46 tcaacacataaccgtttagaccagcggttctcagcttcttaatactgccttcatctaata 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tcaacacataaccgtttagaccagcggttctcagcttcttaatactgccttcatctaata 725
Query: 106 ctgttccacatattatgactcccaaccataaaattatttgtttctacttcataactgtaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctgttccacatattatgactcccaaccataaaattatttgtttctacttcataactgtaa 665
Query: 166 ttttgttgcaattataaaaatgtagacatctactatttgtccaaccccaaagacactcaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttttgttgcaattataaaaatgtagacatctactatttgtccaaccccaaagacactcaa 605
Query: 226 cccacaagttgagaaatgctggctgaaaccatcgaactcaaggccagtgctaggaagaac 285
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 604 cccacaagttgagaaatgctggctgaaaccatcaaactcaaggccagtgctaggaagaac 545
Query: 286 catgtgacttctttcagcatcagcccctccctgctttgaagccaaaggaaaggtaattta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 catgtgacttctttcagcatcagcccctccctgctttgaagccaaaggaaaggtaattta 485
Query: 346 aagcttcaagaccacagtactctggtccatgggagagg 383
||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagcttcaagaccacagtactctggtccatgggagagg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
