BAC Information

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BAC

Clone NameMSMg01-178A04
Chromosome4 (Build37)
Map Location 75,029,361 - 75,097,364
singlet/doubletdoublet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178A04.T7 (MSMg01no178_a04.b1)MSMg01-178A04.TJ (MSMg01no178_a04.g1)
ACCAG372229AG372230
length702753
length of high quality
(start - end)		454 (45 - 498)303 (77 - 379)
definitionCHROMAT_FILE: MSMg01no178_a04.b1 PHD_FILE: MSMg01no178_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:42 2005CHROMAT_FILE: MSMg01no178_a04.g1 PHD_FILE: MSMg01no178_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,029,361 - 75,029,810)(75,097,062 - 75,097,364)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTCTGCTCTCCTGAAGATCTGTCTTTCCACAAGGCTGTACAAAC
TCTCTTGTTCTTATTTCCTATGCATCAACCTCTTTGATAGCCTCCTCTTC
ATTAAAACCACAGTTCTTCAATTTAATGTTATTTAATTCTTAAAGCCCAG
TAATGCACTGGCATAATGAAAAGTGTTCATTTATCGTCCTATTTCATATT
CAACAAGTGAAGGAGTTGTGGTTAGTACCAGATGTTTTAAATAGTTTTTT
CTAAGTACTTGTTGAATTCATCATGGTAAATCATAGCCTAAAAGTGGATT
TACTCTGCAGGAGAGCTTTGTTAAATTTTTGAGAGGTCCCAACATGTCTT
GATTATGCTTCTATTCCATCACTCACTTTTTCTTCCCCCCAAACAAACAA
ACAAACAAAAGAAAACAACAACAAAACAAAATTGCCATCCACCTATTATT
CTAGAATTATAAGGGAACCAAAGGAATACATACCACTGTTTCGATGTTGT
CTACCAGGAGAATGTATTTTGCACCCCATACCGCATATAACTTTCTGCTT
GTACACATTGCTCCTATATCACTAAGATACACTGCCAACAGTGGAATTGT
CATAAAATAACCCTTCATTCTATCTGCTTCTTGGTAGGAAGCTTCCCCCC
GA

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCATCTGTGAAACATTCTTAACT
GTTTAAACAAACATTTAAAAAGATTTACTTTCAGTATAATTTTCTAATAT
GTATGTGTGACCATGTAACTGAATGCCACATGTGTGCATTTGTGTCCTGT
AGAGGCCTAAAGAGTGTGTCAGATATCTTGCTACTGGATTTAAATGGTTG
TTTATTGATGCTACTAGATTAAGTGGTTATTAATGCTAATGGATTTAAAC
GGTGCTGGGAATATGACACTGGCTCTTCTGGAAAAGCAGAAAGTGCTGTT
AAACACTGAGTCATCTCTGCAGTCCCTCAGGTGTGTGTATGACATTTTTT
CTTTATTTTTCTCTTTCCCCCCCTTTATATATATTATTCCCTTTCTTTCT
CCCCATCTCCCCCCCTTCTACTCTTCCTCCTCTCCCCCCTATACCCATCC
CCACAATACACGCTCTCTTCCTCAACTTTCTTTATTTATAATACCCTATT
TATTATCCAATTACTTCCTTCCATTATCTTTTATTTCTCTCCCAATATTT
TTCCTTCCTCCGTCCCCTTATATTCTTTTTACTATCCTTTCCTTTTCTCT
ACTTTTCTCACCACTACTTCTTTGTTTACGTAACAACTCAACCATTCTTT
CCTCCATTTTTTTTAAATTTATCATTCTCCTTGTTACTCCCCTCCCTATT
CAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_a04.b1 MSMg01no178_a04.b1 CHROMAT_FILE:
MSMg01no178_a04.b1 PHD_FILE: MSMg01no178_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:42 2005
         (454 letters)



>mm_chr4_75029157_75030010
          Length = 854

 Score =  832 bits (430), Expect = 0.0
 Identities = 445/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtctgctctcctgaagatctgtctttccacaaggctgtacaaactctcttgt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtctgctttcctgaagatctgtctttccacaaggctgtacaaactctcttgt 264

                                                                       
Query: 65  tcttatttcctatgcatcaacctctttgatagcctcctcttcattaaaaccacagttctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttatttcctatgcatcaacctctttgatagcctcctcttcattaaaaccacagttctt 324

                                                                       
Query: 125 caatttaatgttatttaattcttaaagcccagtaatgcactggcataatgaaaagtgttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatttaatgttatttaattcttaaagcccagtaatgcactggcataatgaaaagtgttc 384

                                                                       
Query: 185 atttatcgtcctatttcatattcaacaagtgaaggagttgtggttagtaccagatgtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttatcgtcctatttcatattcaacaagtgaaggagttgtggttagtaccagatgtttt 444

                                                                       
Query: 245 aaatagttttttctaagtacttgttgaattcatcatggtaaatcatagcctaaaagtgga 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 aaatagttttttctaagtacttgttgaattcatcatggtgaatcatagcctaaaagtgga 504

                                                                       
Query: 305 tttactctgcaggagagctttgttaaatttttgagaggtcccaacatgtcttgattatgc 364
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 tttactcttcaggagagctttgttaaatttttgagagttcccaacatgtcttgattatgc 564

                                                                       
Query: 365 ttctattccatcactcactttttcttccccccaaacaaacaaacaaacaaaagaaaacaa 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctattccttcactcactttttcttccccccaaacaaacaaacaaacaaaagaaaacaa 624

                                         
Query: 425 caacaaaacaaaattgccatccacctatta 454
           ||||||||||||||||||||||||||||||
Sbjct: 625 caacaaaacaaaattgccatccacctatta 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_a04.g1 MSMg01no178_a04.g1 CHROMAT_FILE:
MSMg01no178_a04.g1 PHD_FILE: MSMg01no178_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:42 2005
         (303 letters)



>mm_chr4_75096941_75097643
          Length = 703

 Score =  540 bits (279), Expect = e-158
 Identities = 297/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatctgtgaaacattcttaactgtttaaacaaacatttaaaaagatttactttcagta 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 424 ttcatctgtgaaacattcttaactgtttaaacaaacatgtaaaaagatttactttcagta 365

                                                                       
Query: 61  taattttctaatatgtatgtgtgaccatgtaactgaatgccacatgtgtgcatttgtgtc 120
           || ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 364 tatttttctaatatgtatgtgtgaccatgtgactgaatgccacacgtgtccatttgtgtc 305

                                                                       
Query: 121 ctgtagaggcctaaagagtgtgtcagatatcttgctactggatttaaatggttgtttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctgtagaggcctaaagagtgtgtcagatatcttgctactggatttaaatggttgtttatt 245

                                                                       
Query: 181 gatgctactagattaagtggttattaatgctaatggatttaaacggtgctgggaatatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gatgctactagattaagtggttattaatgctaatggatttaaacggtgctgggaatatga 185

                                                                       
Query: 241 cactggctcttctggaaaagcagaaagtgctgttaaacactgagtcatctctgcagtccc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 184 cactggctcttctggaaaagcagaaagtgctgttaaacactgagtcatctctgcagaccc 125

              
Query: 301 tca 303
           |||
Sbjct: 124 tca 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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