Query= MSMg01no178_k05.b1 MSMg01no178_k05.b1 CHROMAT_FILE:
MSMg01no178_k05.b1 PHD_FILE: MSMg01no178_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:29 2005
(375 letters)
>mm_chr4_73792187_73792961
Length = 775
Score = 702 bits (363), Expect = 0.0
Identities = 366/367 (99%)
Strand = Plus / Plus
Query: 5 gaattccacagccattcctttctttccattgagtggaaaacaacatatatagaacataac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagccatttctttctttccattgagtggaaaacaacatatatagaacataac 264
Query: 65 attcgtccaaaaagatcaaaccaggcatatctgttaggaccacttcaatattatatttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcgtccaaaaagatcaaaccaggcatatctgttaggaccacttcaatattatatttcc 324
Query: 125 agatggctagatctcaacaccaaaacagagaacatgaacagacaaaataatgtgcctctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatggctagatctcaacaccaaaacagagaacatgaacagacaaaataatgtgcctctt 384
Query: 185 ctggaagccaccaaccttattgtgtagggaccagaaaaagcaattcagctaaagtatatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggaagccaccaaccttattgtgtagggaccagaaaaagcaattcagctaaagtatatg 444
Query: 245 acatggaatgacatggacctcaaaatagcaattatataaatgccttaataaaaattttga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatggaatgacatggacctcaaaatagcaattatataaatgccttaataaaaattttga 504
Query: 305 aaacacacagatgaataaaataacaactatagaaacccaagaaatgaattagaatttaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacacacagatgaataaaataacaactatagaaacccaagaaatgaattagaatttaac 564
Query: 365 aaagaaa 371
|||||||
Sbjct: 565 aaagaaa 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_k05.g1 MSMg01no178_k05.g1 CHROMAT_FILE:
MSMg01no178_k05.g1 PHD_FILE: MSMg01no178_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:29 2005
(288 letters)
>mm_chr4_73913490_73914178
Length = 689
Score = 518 bits (268), Expect = e-151
Identities = 284/290 (97%), Gaps = 3/290 (1%)
Strand = Plus / Minus
Query: 1 taggccagacaggtatacacagaaagaccccatgtcaaaga-gaaggaacgcaggcaggc 59
||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 351 taggccagacaggtatacacagaaagaccccatgtcaaagaggaaggaaggaaggcaggc 292
Query: 60 aggcatgttgatccaagcctataccaactattttcttttgaattcattttagattttatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aggcatgttgatccaagcctataccaactattttcttttgaattcattttagattttatt 232
Query: 120 ttattctcctacgtgcatgagtgatggaagtggcatgcaagtggagatcagaggacaact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttattctcctacgtgcatgagtgatggaagtggcatgcaagtggagatcagaggacaact 172
Query: 180 ttcaggagttggt--tctctttcccatgggatccagaactcaacagtcagcagcaggtaa 237
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 171 ttcaggagttggttctctctttcccacgggatccagaactcaacagtcagcagcaggtaa 112
Query: 238 gtcaagtgctttacctacagtcatactttcagttccattttaagtcttta 287
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtcaagtgctttacctacagtcatactttcagttccattttaagtcttta 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space: 189720
Effective search space used: 189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
