BAC Information

Click to search

BAC

Clone NameMSMg01-178L07
Chromosome4 (Build37)
Map Location 102,840,054 - 102,886,756
singlet/doubletdoublet
Overlap geneSlc35d1
Upstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1
Downstream gene4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178L07.T7 (MSMg01no178_l07.b1)MSMg01-178L07.TJ (MSMg01no178_l07.g1)
ACCAG372710AG372711
length727731
length of high quality
(start - end)
618 (45 - 662)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no178_l07.b1 PHD_FILE: MSMg01no178_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:34 2005CHROMAT_FILE: MSMg01no178_l07.g1 PHD_FILE: MSMg01no178_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,840,054 - 102,840,648)(102,886,480 - 102,886,756)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGAGATCTGCCTGTTTCTGCATTCTTCTCGAGTGCTGGCCATCA
TCACCCAGCCATAAATTGTCTATATATACACTATGTACACATTATCTGGT
GCAGAACACTGAAACTATATAAACTACAGCCATATTCTAATTTTTCTCAA
TCTAAACTGACGGTGAAGATTTCCTCATTTAGCTTGCAGTGGTGGTGCAT
CCCTTTCATCCCAGCTCTTGGAAGGCAGAGGCAGGCAGATTTCTGAGTTC
AAGGTCAGCCTTGTCCCGTCCAGCAGGACTTAGTTATTCTGTTTGGCCGT
GTTTCAAGATGTCTTGATCTGGACACTTGGGTAATCTTGTGATATGCAGA
ACCCCTAAGCTGCCCCCAGGTACAGTAAAGTGTGCTGTATACAGGAACTG
ATGTCACAAGGCTGTGAGCACACATGCCATCATAAAGGAACCCTCTTGTC
CCTAGAGAGCACCAGATAAGGACAGGTTTATAATCTTACCTAAAATCCTC
CAGCCAGCATTTCTGACAGAAAGAAGATAGTTTTTCAAAATACTGAGCTC
ACATTTGTATAAACAACCCATAGACAAAACATTTAGGTCCACATCAAAGT
ACTCCTGTAGGTTAACAAATTTCAAGGGAGATTTTGTTGCCAAATGAGCT
TTGCTACTCTAAAATAGTAATAATATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGTGCTCTGAGGACTTTCTGGCC
GTTTTTAACCCCCTTTTCTTTACCCCTTTTGTAGATTTCCATCCTCGCTA
TGTGTTGGACTTGGCCAGGTTAGTTGGAATCTCGGGCATCCCGTGGTCTG
TGTTGTCAGAAGTTCTGTGTGTGTGTGTGTTTCTATGCAGAACAGTGCAT
CTGTGTGTGTTCTCTGTTTGCAGATGGTGGCCACGGTAGCGGTTCTCTGG
GTGGGAAAGACACTCAGAGTAGTCAAGTTTCCTGACTTCGACAGAAATGT
ACCTCGTTTTTTTAACAAACGCGCCACAGAAGGGATACTTTATTTTATAA
AAAGGAGCCATTCTCCCACCCACCAAAGAAAAAAAAAATCAGCGCCTTGA
ATATTTAAAAATGCAGTCTAGCTCCCACCCTAGTCTCCGAGTGCATATAA
CACAGCTAGAGAAAACAGGCCACAGGGCACCCAAGACCACAACGTCTCTG
GAATATGAATATATAATATTCTTCTCTTCATTAAAGATATTCTGCGAACA
GATCTGACCACTCTATCCATGAATTTCTGCCTTCTTTTATCCCTAGCTAT
TTATTTATTTAATGTATATTGGGTATTTATTTATCTTAAATATAACTTTC
CTCTTTGTCATCTCCTTTTTTTTTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_l07.b1 MSMg01no178_l07.b1 CHROMAT_FILE:
MSMg01no178_l07.b1 PHD_FILE: MSMg01no178_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
         (618 letters)



>mm_chr4_102839850_102840867
          Length = 1018

 Score = 1033 bits (534), Expect = 0.0
 Identities = 585/614 (95%), Gaps = 19/614 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagagatctgcctgtttctgcattcttctcgagtgctggccatcatcacccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagagatctgcctgtttctgcattcttctcgagtgctggccatcatcacccag 264

                                                                       
Query: 65  ccataaattgtctatatatacactatgtacacattatctggtgcagaacactgaaactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ccataaattgtctatatatacactatgtacacattatctggtgcagaacactgaagctat 324

                                                                       
Query: 125 ataaactacagccatattctaatttttctcaatctaaactgacggtgaagatttcctcat 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ataaactacagccatattctaatttttctcaatctaaactgacgatgaagatttcctcat 384

                                                                       
Query: 185 ttagcttgcagtggtggtgcatccctttcatcccagctcttggaaggcagaggcaggcag 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ttagcttgcagtggtggtgcatccctttcatcccagttcttggaaggcagaggcaggcag 444

                                                                       
Query: 245 atttctgagttcaaggtcagccttgtcccgtccagcaggacttagttattctgtttggcc 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttctgagttcaaggccagccttgtcccgtccagcaggacttagttattctgtttggcc 504

                                                                       
Query: 305 gtgtttcaagatgtcttgatctggacacttgggtaatcttgtgatatgcagaacccctaa 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 gtgtttcaagatgtcttgatctggacacttgagtaatcttgtgatatgcagaacccctaa 564

                                                                       
Query: 365 gctgcccccaggtacagtaaagtgtgctgtatacaggaactgatgtcacaaggctgtgag 424
           |||| | | ||||||||                   ||||||||||||||||||||||||
Sbjct: 565 gctggctcgaggtacag-------------------gaactgatgtcacaaggctgtgag 605

                                                                       
Query: 425 cacacatgccatcataaaggaaccctcttgtccctagagagcaccagataaggacaggtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacacatgccatcataaaggaaccctcttgtccctagagagcaccagataaggacaggtt 665

                                                                       
Query: 485 tataatcttacctaaaatcctccagccagcatttctgacagaaagaagatagtttttcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tataatcttacctaaaatcctccagccagcatttctgacagaaagaagatagtttttcaa 725

                                                                       
Query: 545 aatactgagctcacatttgtataaacaacccatagacaaaacatttaggtccacatcaaa 604
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 726 aatactgagctcacatttgtaaaaacaacccattgacaaaacatttaggtccacatcaaa 785

                         
Query: 605 gtactcctgtaggt 618
           ||||||||||||||
Sbjct: 786 gtactcctgtaggt 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no178_l07.g1 MSMg01no178_l07.g1 CHROMAT_FILE:
MSMg01no178_l07.g1 PHD_FILE: MSMg01no178_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
         (284 letters)



>mm_chr4_102886280_102886959
          Length = 680

 Score =  509 bits (263), Expect = e-148
 Identities = 275/281 (97%), Gaps = 4/281 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtgctctgaggactttctggccgtttttaacccccttttctttaccccttttgtaga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cctgtgctctgaggacgttctggccgtttttaacccccttttctttaccccttttgtaga 418

                                                                       
Query: 61  tttccatcctcgctatgtgttggacttggccaggttagttggaatctcgggcatcccgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttccatcctcgctatgtgttggacttggccaggttagttggaatctcgggcatcccgtg 358

                                                                       
Query: 121 gtctgtgttgtcagaagttctgtgtgtgtgtgtgtttctatgcagaacagtgcatctgtg 180
           ||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||
Sbjct: 357 gtctgtgttgtcagaagttc----tgtgtgtgtctttctatgcagaacagtgcatctgtg 302

                                                                       
Query: 181 tgtgttctctgtttgcagatggtggccacggtagcggttctctgggtgggaaagacactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgttctctgtttgcagatggtggccacggtagcggttctctgggtgggaaagacactc 242

                                                    
Query: 241 agagtagtcaagtttcctgacttcgacagaaatgtacctcg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagtagtcaagtttcctgacttcgacagaaatgtacctcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 680
Length adjustment: 9
Effective length of query: 275
Effective length of database: 671
Effective search space:   184525
Effective search space used:   184525
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)