Query= MSMg01no178_l07.b1 MSMg01no178_l07.b1 CHROMAT_FILE:
MSMg01no178_l07.b1 PHD_FILE: MSMg01no178_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
(618 letters)
>mm_chr4_102839850_102840867
Length = 1018
Score = 1033 bits (534), Expect = 0.0
Identities = 585/614 (95%), Gaps = 19/614 (3%)
Strand = Plus / Plus
Query: 5 gaattcatagagatctgcctgtttctgcattcttctcgagtgctggccatcatcacccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagagatctgcctgtttctgcattcttctcgagtgctggccatcatcacccag 264
Query: 65 ccataaattgtctatatatacactatgtacacattatctggtgcagaacactgaaactat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ccataaattgtctatatatacactatgtacacattatctggtgcagaacactgaagctat 324
Query: 125 ataaactacagccatattctaatttttctcaatctaaactgacggtgaagatttcctcat 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ataaactacagccatattctaatttttctcaatctaaactgacgatgaagatttcctcat 384
Query: 185 ttagcttgcagtggtggtgcatccctttcatcccagctcttggaaggcagaggcaggcag 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ttagcttgcagtggtggtgcatccctttcatcccagttcttggaaggcagaggcaggcag 444
Query: 245 atttctgagttcaaggtcagccttgtcccgtccagcaggacttagttattctgtttggcc 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttctgagttcaaggccagccttgtcccgtccagcaggacttagttattctgtttggcc 504
Query: 305 gtgtttcaagatgtcttgatctggacacttgggtaatcttgtgatatgcagaacccctaa 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 gtgtttcaagatgtcttgatctggacacttgagtaatcttgtgatatgcagaacccctaa 564
Query: 365 gctgcccccaggtacagtaaagtgtgctgtatacaggaactgatgtcacaaggctgtgag 424
|||| | | |||||||| ||||||||||||||||||||||||
Sbjct: 565 gctggctcgaggtacag-------------------gaactgatgtcacaaggctgtgag 605
Query: 425 cacacatgccatcataaaggaaccctcttgtccctagagagcaccagataaggacaggtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacacatgccatcataaaggaaccctcttgtccctagagagcaccagataaggacaggtt 665
Query: 485 tataatcttacctaaaatcctccagccagcatttctgacagaaagaagatagtttttcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tataatcttacctaaaatcctccagccagcatttctgacagaaagaagatagtttttcaa 725
Query: 545 aatactgagctcacatttgtataaacaacccatagacaaaacatttaggtccacatcaaa 604
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 726 aatactgagctcacatttgtaaaaacaacccattgacaaaacatttaggtccacatcaaa 785
Query: 605 gtactcctgtaggt 618
||||||||||||||
Sbjct: 786 gtactcctgtaggt 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_l07.g1 MSMg01no178_l07.g1 CHROMAT_FILE:
MSMg01no178_l07.g1 PHD_FILE: MSMg01no178_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
(284 letters)
>mm_chr4_102886280_102886959
Length = 680
Score = 509 bits (263), Expect = e-148
Identities = 275/281 (97%), Gaps = 4/281 (1%)
Strand = Plus / Minus
Query: 1 cctgtgctctgaggactttctggccgtttttaacccccttttctttaccccttttgtaga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cctgtgctctgaggacgttctggccgtttttaacccccttttctttaccccttttgtaga 418
Query: 61 tttccatcctcgctatgtgttggacttggccaggttagttggaatctcgggcatcccgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttccatcctcgctatgtgttggacttggccaggttagttggaatctcgggcatcccgtg 358
Query: 121 gtctgtgttgtcagaagttctgtgtgtgtgtgtgtttctatgcagaacagtgcatctgtg 180
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 357 gtctgtgttgtcagaagttc----tgtgtgtgtctttctatgcagaacagtgcatctgtg 302
Query: 181 tgtgttctctgtttgcagatggtggccacggtagcggttctctgggtgggaaagacactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgttctctgtttgcagatggtggccacggtagcggttctctgggtgggaaagacactc 242
Query: 241 agagtagtcaagtttcctgacttcgacagaaatgtacctcg 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagtagtcaagtttcctgacttcgacagaaatgtacctcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 680
Length adjustment: 9
Effective length of query: 275
Effective length of database: 671
Effective search space: 184525
Effective search space used: 184525
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|