CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTGCACAATTATTATTAAAAAACAATAAGAGGCACATGCAGAA
GTTGTGGTTTAATTAGTTCCGAGTCTTATTCAGACATTTGGCAGCTTTTG
GAAGCACTCCAGTTTGTTTGACCTGAGATCAGGTGTGGGAAACCCTGCTC
TAGACATTGTGCTCACTCATGATATCCTGTGCTATCTGACCCCCTTCACA
AATACAACTTGTCCTACCTCTTTCTGCTTCTCTGGAAATGGTACTTTTTA
TGATTGTCTTGCATCATATACATCCTCTTGTTTTTATTGTCTGCAAATTT
ATTTGATTCCGACATTTCCCTCAGCTCTGTGGAAGAGAATTCATCTTCCC
TACATGTAATCTTTTTCAAGCTCACCTCAGGGGAAGAGCTTTGCATACTT
GCCAATGAATTACTCTGTTGATAAGCAAAAGTATGTAAATACCATATATG
CAAATTAAAATTAATTCAGATATATAATATGAGTTAGAGTTTTGTTGAAA
GTTAGCACAAATATTGAGGAAAAACAATACACTTGAACTAGAATACAGCT
TAACACAGTTTGATATCATTTCTGATAAATCACAGACCCCAACAGACAAC
CTTGTTTAGCCTTATATTAATTGTATTTTTCTCTATTTAATAAACTTGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCATGGAGTTAGAATCAAAC
CCAAACAGAGAGTGGTTAGCAACTGTTCACATTATTGTCACTATTATAAT
GGTGACATCTGTGTCTAGGCAGCTTGTTATTAGAGTTCTTAGGATCCACA
GGTGAGGAAGACTGTGAATGTCTATTCTCTCTCTTAGCAACCCATATATG
GTACCCTTCTACAATATAAAATATAGCTGTCAGGAGGTCTTTCCTTCTCA
ATTTCAGCTTAATTTCTCTCTCTTACAGGAACGTGTATGTCTTCAGCAAT
ACTGTCCTATTAACACTACCAAGTTCTGCTAGGCAGCCACTAGGAATGGT
GATAGATTATCTGGGGGCTTTTGGTACCTCACTGACAGTTTGCAAGGAGG
TGCCCCATAGCTGTCACTGACTTCTTTTCAAATAACCCATGATTTTTAAG
ATAGGTCTTACCCAGTCATTTATCAGATGTCTCTTCCATTTCTTTAATTG
GCTTTTTAGATTGGTGTGCAGAGTTATTCAGTTCCTCTTCATTTTTGCTA
AGTGGCCTACACTTTCTCCTTTGTACTGCTTTCCCATCCATTTTTGCTTT
AACCTTACTGTCCATCCCCAATGTTTCACCTGTCTAATTTCATATCATCT
AT

Query= MSMg01no178_l14.b1 MSMg01no178_l14.b1 CHROMAT_FILE:
MSMg01no178_l14.b1 PHD_FILE: MSMg01no178_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:35 2005
         (582 letters)



>mm_chr4_38889120_38890102
          Length = 983

 Score = 1006 bits (520), Expect = 0.0
 Identities = 565/580 (97%), Gaps = 3/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattgcacaattattattaaaaaacaataagaggcacatgcagaagttgtggtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattccattgcaaaattattattaaaaaacaataagaggcacatgcagaagttgtggtt 724

                                                                       
Query: 65  taattagttccgagtcttattcagacatttggcagcttttggaagcactccagtttgttt 124
           |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 723 taattagttctgagtctgattcagacatttggcagcttttgaaagcactccagtttattt 664

                                                                       
Query: 125 gacctgagatcaggtgtgggaaaccctgctctagacattgtgctcactcatgatatcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gacctgagatcaggtgtgggaaaccctgctctagacattgtgctcactcatgatatcctg 604

                                                                       
Query: 185 tgctatctgacccccttcacaaatacaacttgtcctacctctttctgcttctctggaaat 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgctatctgatccccttcacaaatacaacttgtcctacctctttctgcttctctggaaat 544

                                                                       
Query: 245 ggtactttttatgattgtcttgcatcatatacatcctcttgtttttattgtctgcaaatt 304
           |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 543 ggtactttttataattgtcttgcatcatagacgtcctcttgtttttattgtctgcaaatt 484

                                                                       
Query: 305 tatttgattccgacatttccctcagctctgtggaagagaattcatcttccctacat-gta 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 483 tatttgatcccgacatttccctcagctctgtggaagagaattcatcttcccta-attgta 425

                                                                       
Query: 364 atcttttt-caagctcacctcaggggaagagctttgcatacttgccaatgaattactctg 422
           || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 attttttttcaagatcacctcaggggaagagctttgcatacttgccaatgaattactctg 365

                                                                       
Query: 423 ttgataagcaaaagtatgtaaataccatatatgcaaattaaaattaattcagatatataa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttgataagcaaaagtatgtaaataccatatatgcaaattaaaattaattcagatatataa 305

                                                                       
Query: 483 tatgagttagagttttgttgaaagttagcacaaatattgaggaaaaacaatacacttgaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tatgagttagagttttgttgaaagttagcacaaatattgaggaaaaacaatacacttgaa 245

                                                   
Query: 543 ctagaatacagcttaacacagtttgatatcatttctgata 582
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctagaatacagcttaacacagtttgatatcatttctgata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)