CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAATCCACGAAGGAAATGTGCAGGTAATTCTCACGGCTTAGCTC
TGGGATGCTTTCTGGTTCTGCAATATTATTCTGTTAGTGAGGATTTACAG
GATAAGTTTCCCGAACTCTGTTCTTTCCTTTGAGTAGTAGTTCTGCAATT
GTAATTTAGTTCCTTTCAATGTTCAGAGCTGCTATTCAGAAGTGAATGGA
TATTCTGAAATTCATCTTAGAGAGTCATATTCCTTTATCTGGCAGCTATG
AGATTTCTGTGAAATAATGCTTTTATACCCATTTAAATTTTGGTTATTGT
TATCACAATCTACTTAGAAAAATGTGGTAATATACAGCCACAGCATAGAT
AACAATAATGTATTACAACTTGAGAATCACATCATTAGGTTTAAGTAGAC
TTTCCACTAAAATAACAGTTCAATAACTGTACCATCTATGCATATAGAAA
ATCACCATGTTTTACATGATAAGTATATAGTTTCTATTCTTGGAAACATA
TTTTGAATTAGCACTTTCTTACTATGGCAACATTTCTTTCATCTTTATTC
TTTCCATACTAGCAGTTAGTGCGCATAGCCTTTCCATTTATATCCAGTAT
TTATAGAGTTTTTCTTTAACAGAAACATAATAGCTAGAATTCCAAGAGAT
GCTTATCCCCCATAG

ACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAACAGAGGAATCTTGAATGGCTG
AGAAACACTTAAATGTCAAATGTCCTTCATGATCAGAGAAACAAAAGTCA
AAATGACCCCAAGATTCCATCTTATACCCATCAGAATGGCTGAGATAAAA
AACTTAAGACACAGCACATTCTGGCAAGGATGTGGAGCAAGGGGAACACT
CCTCCATTTCTGGGGAAGTGCAAACTTGTATAACCATTCTGGAAATCAAT
TTGACAGTTTTTCAGAAAACTGGAAATTATTCTACCAGAAGACACAGCTC
TAGTGCTCCTGTTAATATGCCCAAAAGACACTCTCCACTACAGCACAAAG
ACACATGCTTAATTATGCTTATAACATCTTTATTAGTAACAGCCAGAAAC
TGGAAATAGTACCCCAACTGAAGAATGGATACAAAAATTGTGATTCATTT
AGACAATGAAATACTATGCAGCTATTAAAAACAATGAAATGTGTAGGCCA
ATGAATGGAATGAGAAAATTATCCTGAGTGAGGTAACTCAGACTGAAAAG
GACATGCATGATATACTCACATAAAAGTGGCTATTAGCCATAAAGTACAG
GAAAGCCATGCTATAGCTCTCAGAATCACAGAAGCTAAACAAGAAGGAAG
GCCAAAGTGAAGATACTTGA

Query= MSMg01no178_o10.b1 MSMg01no178_o10.b1 CHROMAT_FILE:
MSMg01no178_o10.b1 PHD_FILE: MSMg01no178_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:47 2005
         (560 letters)



>mm_chr4_15297421_15298380
          Length = 960

 Score =  990 bits (512), Expect = 0.0
 Identities = 545/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatccacgaaggaaatgtgcaggtaattctcacggcttagctctgggatgct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatccaagaaggaaatgtgcaggtaattctcacggcttagctctgggatgct 264

                                                                       
Query: 65  ttctggttctgcaatattattctgttagtgaggatttacaggataagtttcccgaactct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ttctggttctgcaatattattctgttagtgaggatttacaggataagtttcccaaactct 324

                                                                       
Query: 125 gttctttcctttgagtagtagttctgcaattgtaatttagttcctttcaatgttcagagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttctttcctttgagtagtagttctgcaattgtaatttagttcctttcaatgttcagagc 384

                                                                       
Query: 185 tgctattcagaagtgaatggatattctgaaattcatcttagagagtcatattcctttatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 tgctattcagaagtgaatggatattctgaaattcatcttagagagtcatattcctttatg 444

                                                                       
Query: 245 tggcagctatgagatttctgtgaaataatgcttttatacccatttaaattttggttattg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 tggcagctatgagatttctgtgaaataatgcttttatactcatttaaattttggttattg 504

                                                                       
Query: 305 ttatcacaatctacttagaaaaatgtggtaatatacagccacagcatagataacaataat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatcacaatctacttagaaaaatgtggtaatatacagccacagcatagataacaataat 564

                                                                       
Query: 365 gtattacaacttgagaatcacatcattaggtttaagtagactttccactaaaataacagt 424
           |||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 565 gtattataatttgagaatcacatcattagttttaagtatactttccactaaaataacagt 624

                                                                       
Query: 425 tcaataactgtaccatctatgcatatagaaaatcaccatgttttacatgataagtatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaataactgtaccatctatgcatatagaaaatcaccatgttttacatgataagtatata 684

                                                                       
Query: 485 gtttctattcttggaaacatattttgaattagcactttcttactatggcaacatttcttt 544
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 685 gtttctattcttgcaaacatatttttaattagcactttcttactatggcaacatttcttt 744

                           
Query: 545 catctttattctttcc 560
           | ||||||||||||||
Sbjct: 745 cgtctttattctttcc 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)