Query= MSMg01no178_p18.b1 MSMg01no178_p18.b1 CHROMAT_FILE:
MSMg01no178_p18.b1 PHD_FILE: MSMg01no178_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:53 2005
(566 letters)
>mm_chr4_153739060_153740023
Length = 964
Score = 1017 bits (526), Expect = 0.0
Identities = 553/562 (98%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctgcacggtcacatgggagagagacaaccagcaggtgaggatccaggcaag 64
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcctgcaaggtcacatgggagagagacaaccagcaggtgaggatccaggcaag 264
Query: 65 tctgacttgatcgctagcctggtgtgcgggcacagggcacagggaaaaggccaaagagca 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgacttgat-gctagcctggtgtgcgggcacagggcacagggaaaaggccaaagagca 323
Query: 125 caggcacagggcagggcaaggctggggatgcagtagctttgagtgaaaggctgtaaatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggcacagggcagggcaaggctggggatgcagtagctttgagtgaaaggctgtaaatca 383
Query: 185 ccttatcctggaggaccattttcttgcccatggtctgaaatgaaaggagaatttcctgcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttatcctggaggaccattttcttgcccatggtctgaaatgaaaggagaatttcctgcc 443
Query: 245 aggcaatctcttctctcacccacaaggtagtttaaagtaaacttccttgaagtggctttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggcaatctcttctctcacccacaaggtagtttaaagtaaacttccttgaagtggctttt 503
Query: 305 ataaaggtttctgaagaccagcgttcctttgagaggatccttttctgtgcttcctaaaaa 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataaaggtttctgaagaccagtgttcctttgagaggatccttttctgtgcttcctaaaaa 563
Query: 365 gtttgccccacaaagatacagtaaagcctcactgctttagggtatctgagttctagcatc 424
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 564 gtttgccccacaaagatacagtaaagcctcactgctt-agggtagctgagttctagcatc 622
Query: 425 tatttcctaagtaacaaaacctgtaccctctccgctctaccggcacccctgcacccagct 484
| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 623 tgtttcctaagtaacaaaacccgtaccctctccgctctaccggcactcctgcacccagct 682
Query: 485 gcacccctcctccagtgcttcccaggctagggtgctctgcagacctgagcttcagacgga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcacccctcctccagtgcttcccaggctagggtgctctgcagacctgagcttcagacgga 742
Query: 545 gcatgaccaagctctgtgtgcc 566
||||||||||||||||||||||
Sbjct: 743 gcatgaccaagctctgtgtgcc 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 964
Length adjustment: 10
Effective length of query: 556
Effective length of database: 954
Effective search space: 530424
Effective search space used: 530424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p18.g1 MSMg01no178_p18.g1 CHROMAT_FILE:
MSMg01no178_p18.g1 PHD_FILE: MSMg01no178_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:53 2005
(282 letters)
>mm_chr4_153884873_153885553
Length = 681
Score = 257 bits (133), Expect = 4e-73
Identities = 136/137 (99%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 1 cagacatgaactgatccttcccaagtctgggtctgagcatccacatcgacttcttcatgc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 cagacatgaactgatccttcccaagtctgggtctgagcatccacat-gacttcttcatgc 257
Query: 61 agacatactgtcctgtacacacatatttgtacaaccctgttcacattctctcccctacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agacatactgtcctgtacacacatatttgtacaaccctgttcacattctctcccctacac 197
Query: 121 acacacacacacacaca 137
|||||||||||||||||
Sbjct: 196 acacacacacacacaca 180
Score = 236 bits (122), Expect = 1e-66
Identities = 125/126 (99%)
Strand = Plus / Minus
Query: 136 catccacatgacttcttcatgtagacatactgtcctgtacacacatatttgtacaaccct 195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 catccacatgacttcttcatgcagacatactgtcctgtacacacatatttgtacaaccct 219
Query: 196 gttcacattctctcccctacacacacacacacacacacacacacacacacacacacacac 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gttcacattctctcccctacacacacacacacacacacacacacacacacacacacacac 159
Query: 256 acacac 261
||||||
Sbjct: 158 acacac 153
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space: 183456
Effective search space used: 183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
