Query= MSMg01no180_n03.b1 MSMg01no180_n03.b1 CHROMAT_FILE:
MSMg01no180_n03.b1 PHD_FILE: MSMg01no180_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:09 2005
(658 letters)
>mm_chr4_110004105_110005161
Length = 1057
Score = 1239 bits (641), Expect = 0.0
Identities = 653/657 (99%), Gaps = 1/657 (0%)
Strand = Plus / Minus
Query: 1 agcctttaaatgcaggcagtctaattccatagcctgcctccctcctcaccttgttactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 agcctttaaatgcaggcagtctaattccatagcctgcctccctcctcaccttgttactca 797
Query: 61 attgcatttgtaacttcgttaagttcagtaaacttacagggatcatcccttatgagtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 attgcatttgtaacttcgttaagttcagtaaacttacagggatcatcccttatgagtttt 737
Query: 121 tggtaaaggttatttttatgattgcctcagcattttaaatattcccaagtcctttctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggtaaaggttatttttatgattgcctcagcattttaaatattcccaagtcctttctatt 677
Query: 181 tgggagtcagttattaaaatcatctatgaaattccacaatttctttttcatcttaggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgggagtcagttattaaaatcatctatgaaattccacaatttctttttcatcttaggcac 617
Query: 241 atttgctaagtgcagatttttttttcttaaaatgactaaacatcattgtatttccaaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atttgctaagtgcagatttttttttcttaaaatgactaaacatcattgtatttccaaggc 557
Query: 301 aaaaggagttgttttcctgagatttttttagtatggttaatggcgttagatacagcatgt 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaaaggagttgttttcctgaga-ttttttagtatggttaatggcgttagatacagcatga 498
Query: 361 gcagttctaaatcatcattcaatgaaatgaaggaaacagcagttcttgagcagtctctct 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 gcagttctaaatcatcattcaatgaaatgaaggaaacagcagttcttgagcagtgtctct 438
Query: 421 gggtttcgggagaagcaatgaaattacaaaggccagaggggctgaagactgcattacttc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 437 gggtttcgggagaagcaatgaaattacaaaggccagagaggctgaagactgcattacttc 378
Query: 481 cctgaattctcctttggcttctactcatttactgctatttgagagtcaattctgaactat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cctgaattctcctttggcttctactcatttactgctatttgagagtcaattctgaactat 318
Query: 541 ggtaagaggcacatggactcctctgtaggactcccttgcccatcatttaaattttccttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggtaagaggcacatggactcctctgtaggactcccttgcccatcatttaaattttccttt 258
Query: 601 taattagtctgtgctttcatttggtagtaagactgtggagcatgaaaaccccgctgt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taattagtctgtgctttcatttggtagtaagactgtggagcatgaaaaccccgctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_n03.g1 MSMg01no180_n03.g1 CHROMAT_FILE:
MSMg01no180_n03.g1 PHD_FILE: MSMg01no180_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:09 2005
(651 letters)
>mm_chr4_109879395_109880441
Length = 1047
Score = 1189 bits (615), Expect = 0.0
Identities = 641/651 (98%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 1 tatggggaagggactctggttcactcattctaatgctgggtttattcattcagtggagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggggaagggactctggttcactcattctaatgctgggtttattcattcagtggagtg 260
Query: 61 cacacaggctctcacagacacagtggcccataggaaaaaatatatgtttattaattgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacaggctctcacagacacagtggcccataggaaaaaatatatgtttattaattgagt 320
Query: 121 gaatgacaattttgatgtcggtgcttggaaaatgttactctgttactttttaggagacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgacaattttgatgtcggtgcttggaaaatgttactctgttactttttaggagacta 380
Query: 181 agggatggccctaaaagcgctcaattgtaccatcatcacggccctccactgacgtctgtc 240
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agggatggccctagaagcgctcaattgtaccatcatcacggccctccactaacgtctgtc 440
Query: 241 agagacctcttggtgccactaaggttggtatcttacacatgaggaggtatcttgttatta 300
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 441 agagacctcttggtgccactaaggttg-taa---acacatgaggaggtatcttgttatta 496
Query: 301 accagatgagtggctcatgttcttttcagcatttatttatgaggtttctcccatagaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accagatgagtggctcatgttcttttcagcatttatttatgaggtttctcccatagaatt 556
Query: 361 ggagcagttataatagatgtactactccttgatactatatcgtctcaaatccatttctga 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 ggagcagttataatagatgtactactccttcatactatatcgtctcaaatccatttctga 616
Query: 421 gcatcattggaacaagacctcaagtggtttgtgcagttataatttttgaattgctatata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcatcattggaacaagacctcaagtggtttgtgcagttataatttttgaattgctatata 676
Query: 481 ttagaaaagcataaaactactcttttcttcagtgcaactattgctttaggttagaaatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttagaaaagcataaaactactcttttcttcagtgcaactattgctttaggttagaaatgc 736
Query: 541 catgtttttatgtttgtttagaattgaaaagaaaaaaaaacctgtaggttttattcactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 catgtttttatgtttgtttagaattgaaaagaaaaaaaaacctgtaggttttattcactg 796
Query: 601 ataaaataaacccatgtggcatttgtgatggaagaaacagttaggatacca 651
| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 797 acaaaataaacccatgtggcatttgtgatggaaaaaacagttaggatacca 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1047
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1037
Effective search space: 664717
Effective search space used: 664717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
