Query= MSMg01no181_c09.b1 MSMg01no181_c09.b1 CHROMAT_FILE:
MSMg01no181_c09.b1 PHD_FILE: MSMg01no181_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:33 2005
(616 letters)
>mm_chr4_18115259_18116274
Length = 1016
Score = 723 bits (374), Expect = 0.0
Identities = 377/378 (99%), Gaps = 1/378 (0%)
Strand = Plus / Minus
Query: 239 aatatttacccctaacactcatggaaacataaatgagcccgaggagaagtaactagccat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aatatttacccctaacactcatggaaacataaatgagcccgaggagaagtaactagccat 957
Query: 299 gtgggatgacttagactagttaaaattgtatacttgagttatgagctagtgaaaacaagc 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gtgggatgacttagact-gttaaaattgtatacttgagttatgagctagtgaaaacaagc 898
Query: 359 cacaactgttggcataggcatttgtatataagacatctcaaagtcattattttggggaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cacaactgttggcataggcatttgtatataagacatctcaaagtcattattttggggaac 838
Query: 419 aaaaagcttgagtggaaaagcttgtggttataccttgctctttccctttaactacctaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aaaaagcttgagtggaaaagcttgtggttataccttgctctttccctttaactacctaaa 778
Query: 479 tatcattacatggattttgagcaggaaattgactccatgcaacacctttatgaaagaaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tatcattacatggattttgagcaggaaattgactccatgcaacacctttatgaaagaaac 718
Query: 539 agttccatatttctgttatattattgaagtcaattaagcaaaaaaatactgatgatacat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 agttccatatttctgttatattattgaagtcaattaagcaaaaaaatactgatgatacat 658
Query: 599 ggatatgttgaaaaagtg 616
||||||||||||||||||
Sbjct: 657 ggatatgttgaaaaagtg 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_c09.g1 MSMg01no181_c09.g1 CHROMAT_FILE:
MSMg01no181_c09.g1 PHD_FILE: MSMg01no181_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:33 2005
(625 letters)
>mm_chr4_17990147_17991171
Length = 1025
Score = 1193 bits (617), Expect = 0.0
Identities = 623/625 (99%)
Strand = Plus / Plus
Query: 1 cagggagcttaccacttttcattcttactactttcgttttgtactcagcaaatatatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggagcttaccacttttcattcttactactttcgttttgtactcagcaaatatatttg 260
Query: 61 caattgtttaatgtttattgaatatattatgtgtatgcacatgtgcatgtgtgaaagata 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattgtttaatgcttattgaatatattatgtgtatgcacatgtgcatgtgtgaaagata 320
Query: 121 gagagcacatgtaagcatgtgtgtgtgcatagacacatgtgtgtctgccatatgtgtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagcacatgtaagcatgtgtgtgtgcatagacacatgtgtgtctgccatatgtgtggg 380
Query: 181 cagacaaaaatgtgaattcagtactttccttccactatatgagtccagaagacctagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacaaaaatgtgaattcagtactttccttccactatatgagtccagaagacctagctc 440
Query: 241 aggtcatcagacttattagcaaaaaacccttaccactgcaccatctaatcagtctaggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtcatcagacttattagcaaaaaacccttaccactgcaccatctaatcagtctaggta 500
Query: 301 tgtttcttttgttgtatggtctgagttcaactatatttaagaagagacaatattttttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttcttttgttgtatggtctgagttcaactatatttaagaagagacaatattttttta 560
Query: 361 gtggtaatagaacataaaatgtcgagatttaaatttttatcataagagtacagccctcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggtaatagaacataaaatgtcgagatttaaatttttatcataagagtacagccctcct 620
Query: 421 aagaatttaagttagaatttattttgttaaaaaaataaaaaataaaaagattagtccaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaatttaagttagaatttattttgttaaaaaaataaaaaataaaaagattagtccaag 680
Query: 481 tttttgctgcatttctctcatgagcactcaatgactaaacccatatattttttttctgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttgctgcatttctctcatgagcactcaatgactaaacccatatattttttttctgta 740
Query: 541 ctatttgaaacaacaacatagtggaaaaacggaaatgatcatcaatagggaatttagtat 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctacttgaaacaacaacatagtggaaaaacggaaatgatcatcaatagggaatttagtat 800
Query: 601 tagacaattcaatggaatataacat 625
|||||||||||||||||||||||||
Sbjct: 801 tagacaattcaatggaatataacat 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
