Query= MSMg01no181_k07.b1 MSMg01no181_k07.b1 CHROMAT_FILE:
MSMg01no181_k07.b1 PHD_FILE: MSMg01no181_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:09 2005
(486 letters)
>mm_chr4_46784695_46785580
Length = 886
Score = 849 bits (439), Expect = 0.0
Identities = 472/483 (97%), Gaps = 2/483 (0%)
Strand = Plus / Minus
Query: 5 gaattccagacatatgcctataaggaagtgagtgtggggaccacagagccattgctacta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccagacatatgcctataaggaagtgagtgtggggaccacagagccattgctacta 460
Query: 65 agcctgcagtatcccaagggagccctggagctggaatggggaaagcctgggcctctaagc 124
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 459 agcctgcagtatctgaagggagccctggagctggaatgggggaagcctgggcctctaagc 400
Query: 125 tttctgttagtctgtcagccctgggaatgatatccttggacaaggccattgctcagagta 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 399 tttctgttagtctgtcagccctgggaatggtatccttggacaaggccattgctcagagta 340
Query: 185 gaagataactcccagcaagggacttagctgagattctcagtctcctgtacttaacatcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaagataactcccagcaagggacttagctgagattctcagtctcctgtacttaacatcaa 280
Query: 245 gagccagggatgg-ctgctcggctggacatagcccagaactcctatagatgaccacatgc 303
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 279 gagccagggatggtc-gctcggttggacatagcccagaactcctatagatgaccacatgc 221
Query: 304 ctttgcttaaaggctgtttgctttaagacaggggtttgttttgtgacccaggctggcctc 363
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cttcgcttaaaggctgtttgctttaagacaggggtttgttttgtgacccaggctggcctc 161
Query: 364 agaataaccgctacactgcctacacatcacaggggcagggatgcacggtcacactcgggt 423
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agaataattgttacactgcctacacatcacaggggcagggatgcacggtcacactcgggt 101
Query: 424 tcagttgtagtctctgtacccttgccatccgtaataattcacatccttgcatttggttgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tcagttgtagtctctgtacccttgccatccgtaataattcacatccttgcatttggttgc 41
Query: 484 aca 486
|||
Sbjct: 40 aca 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_k07.g1 MSMg01no181_k07.g1 CHROMAT_FILE:
MSMg01no181_k07.g1 PHD_FILE: MSMg01no181_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:09 2005
(466 letters)
>mm_chr4_46631933_46632791
Length = 859
Score = 551 bits (285), Expect = e-161
Identities = 308/319 (96%), Gaps = 7/319 (2%)
Strand = Plus / Plus
Query: 148 gacacccacccctgcttctcccagaagcctctcctctctctctccctcccatcacccagc 207
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 348 gacacccacccctgcttctcccagaagcctctcctctctccctccctcccatcacccagc 407
Query: 208 agttctttggtcctagttataaaacatgggaggccatgggaggtagtgtttgggaccaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agttctttggtcctagttataaaacatgggaggccatgggaggtagtgtttgggaccaga 467
Query: 268 ccggctctggctctgtgtgctgtccttagagacagcgagtgaggtcaagggcacccatcc 327
||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 468 ccggctctggctctgtgtgctgtccttagagacagcgag----gtcaagagcacccattc 523
Query: 328 ttagcctcaggcaggctgctgcctgggtcgctccttacagagaccctgcagctcctcaca 387
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 ttagcctcaggcaggctgctgcctgggtcgctccttacagagaccctgcagctc---aca 580
Query: 388 acaggcatcatactcaaatgaagtccccagccctccagtcatggttggtccctgtgagtt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acaggcatcatactcaaatgaagtccccagccctccagtcatggttggtccctgtgagtt 640
Query: 448 gggggtagcctgaggagag 466
|||||| ||||||||||||
Sbjct: 641 gggggtggcctgaggagag 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 859
Length adjustment: 10
Effective length of query: 456
Effective length of database: 849
Effective search space: 387144
Effective search space used: 387144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
