BAC Information

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BAC

Clone NameMSMg01-181L07
Chromosome4 (Build37)
Map Location 30,326,617 - 30,326,935
singlet/doubletsinglet
Overlap geneLOC665185
Upstream genenone
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181L07.T7 (MSMg01no181_l07.b1)MSMg01-181L07.TJ (MSMg01no181_l07.g1)
ACCAG374804AG374805
length752783
length of high quality
(start - end)
513 (39 - 551)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no181_l07.b1 PHD_FILE: MSMg01no181_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:14 2005CHROMAT_FILE: MSMg01no181_l07.g1 PHD_FILE: MSMg01no181_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCTTCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAC
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAAGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCCATTCGCATTCTTCT
ACATGATAACTACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTT
TCTTCCACTGTATGGTTTTAGCTCCCTTATCGAAGATCAAGTGACCACAG
GTGTGTGGGTTCTTTTCTGGGTCTTCAATTCTATTCCATTGTTTCTACTT
GCCTGTCTCTATACCAGTATCCCGCCACCCTCTTACCCCAATTGCTCTTG
TATCAAAGCTTTTTTTTCCCTCCTTGTTGTTCTCCGTCATACCGTTTCTT
TTATCCCTTGGACAAGAGTTTCTTGTTTCTCCCTATTGTTTTTTCCGCCC
CT
CATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACAGCCTTCTACAGAAGTCTATTC
ATGCATTGCAAAATGTGAATAATCCCAGGAGCCTGTGGAACTTCCTGTAA
AGTAGTTCACATGTAAGGACACAGGCAAGGATGAAAAATAAAAGCATATA
AATAATTATTTGCATTTAATTTAATCACAATTGAACCAAGCTACACAAAT
CAATAGCAAAAGAAACTCTAGAAATGCACAAAGTTATGGAGATTAAAAAT
GAAATATGATAAAAATTGTTTTTGAGAAATTTAAAATGAGAAAACAGGTT
AACAAAACTATCTGGTACATTTAAGTAGTCGTAAGAAGAATGTGTATAGC
TCAAAATGCCCACACTAACAAAAATAAATAAAAAATCAGAGAGATCTAAA
GTATATAACGCTCTGTTCTCTTTCTCTCTCTGTATGTGTGTATATATATA
TATACATATATATATATATATGTTCTGTGTTTGTTTTGTTCCCCCCTTTT
TTCCTTTTTTCCCATTTTCACCCCCACTCCTTTTTTTTTTCACCCCTCCC
CCCCCCCCCCATTTTTCCCTTTTTCTCCCCTCTTCCTCTTTCCTTTATCA
AAGCTATATATTTTTTTTTTCCACCATTTTCTTTTTTTTCCCAAACCACC
CCTTTTTCTTCTCTACTTACACATTTTCCCCCCTTTTGCCTACTTATAAT
TATTAATTTATTTTCTATCCTCCACCCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_l07.g1 MSMg01no181_l07.g1 CHROMAT_FILE:
MSMg01no181_l07.g1 PHD_FILE: MSMg01no181_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:14 2005
         (341 letters)



>mm_chr4_30326195_30326935
          Length = 741

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 23  ttcatgcattgcaaaatgtgaataatcccaggagcctgtggaacttcctgtaaagtagtt 82
           ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||
Sbjct: 741 ttcatgcattgcaaaatgtgaattatttcaggagcctgtggaacttcctgtaaagtagtt 682

                                                                       
Query: 83  cacatgtaaggacacaggcaaggatgaaaaataaaagcatataaataattatttgcattt 142
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 cacatgtaaggacacaggcaaggatgaaaaataaaagtatataaataattatttgcattt 622

                                                                       
Query: 143 aatttaatcacaattgaaccaagctacacaaatcaatagcaaaagaaactctagaaatgc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttaatcacaattgaaccaagctacacaaatcaatagcaaaagaaactctagaaatgc 562

                                                                       
Query: 203 acaaagttatggagattaaaaatgaaatatgataaaaattgtttttgagaaatttaaaat 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaagttatggagattaaaaatgaaatatgataaaaattgtttttgagaaatttaaaat 502

                                                                       
Query: 263 gagaaaacaggttaacaaaactatctggtacatttaagtagtcgtaagaagaatgtgtat 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaaacaggttaacaaaactatctggtacatttaagtagtcgtaagaagaatgtgtat 442

                              
Query: 323 agctcaaaatgcccacact 341
           |||||||||||||||||||
Sbjct: 441 agctcaaaatgcccacact 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)