BAC Information

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BAC

Clone NameMSMg01-182G03
Chromosome4 (Build37)
Map Location 87,646,274 - 87,646,819
singlet/doubletsinglet
Overlap geneMllt3
Upstream geneSlc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182G03.T7 (MSMg01no182_g03.b1)MSMg01-182G03.TJ (MSMg01no182_g03.g1)
ACCAG375281AG375282
length733710
length of high quality
(start - end)		492 (48 - 539)545 (78 - 622)
definitionCHROMAT_FILE: MSMg01no182_g03.b1 PHD_FILE: MSMg01no182_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:07 2005CHROMAT_FILE: MSMg01no182_g03.g1 PHD_FILE: MSMg01no182_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCATCACCACCAATTTCATTTTTCCCCTATATTTTCTCCTATT
TTCAACAGATTCATGTCTTAAATGAAAGTTGTCAGTCTACTTCAATTGAT
TTTCTTCCAATAGGATCTAATTTCATTCTTCTGTATGTACATATCAAACT
AAAAAAAAAATCTATTTAAAAAAAACTGCCTTTAACCCAGATATAGCTGT
CTCTTGTGAGACTATGTCGGGGCCTAGCAAACACAGAAGTGGATGCTCAC
AGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAA
GTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAGGCGGAACAACAATA
TGAACTACCCAGAACCCCCCCGGAGCTCATGTCTCTAGCTGCATATGTAT
CAGAAGATGGCCTAGTTGGCCATCAGTGGAAAGAGAGGCCCAGTGATCGT
GCAAACTTTATATGCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGTGGG
AGCGGGTGGTTGTTCCTTTTTTTTCTACCCCCCACTTTTTTCTCCCATTC
CCACCCCTAAAATTTTTTTTTTTTTCCTTTTTTTCCTTTACCCATTTTTT
CCCCCTTTTTTTTTTTATCCCACATATTTTCCTTTTTAACCCCCCTATTC
CCGCTTTCTCTATTTTTTCCCTATTTCTCTCCC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCACTTCTCTGAGAGTCACA
TGTCTGTTCTACCATTCTAAGATTAAGAATCAGCTCTGACTGATTGCACT
CACATGCATATGATCATCTGAATTATGGGTAGCCTAACACTCCCTGAAAA
AAGGTGAGCCTAAGACAACCACGAAGATCTGGCACTGCACAGGCTTGGCG
GGCAGATCATCCTCAAGAACCCCTGTCTGGCACCATATAACACACAAGCA
CAGCATAGCACTCCTGAGACCACATCTGAGAAGACCCTGGGAGCCACTAA
GATGACCAAGCAAGTGGTGGAGAAATGGAAAAGAGAAACAGAAGGATGTG
TGCCCAATGCAGAACTGGAGGGTAGTAAGGAACAGCGTAATGTGAGTAGC
CAGCCGGTGATGCCACCTGGGGCTATGGTGGGGTTCTGGTCTGTGCTGCC
ACCAGCAGTCGCATCTGGGCTCATGACCTTGCAGCACTGGGGGTCTGCGA
CCACCAAAGGCCAGGACATCCCTGGTTTGGGCTGCCACCAGGGGACATGC
TGATGTTTGAGGGCTATGCAGATGTGGGATAGATGCGCTGTAAATGTGTG
GGACATTAGCCTTCTTTTTTATTTTTCTTCTCTATTCTCCATTTCAGTTT
TTATCTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_g03.g1 MSMg01no182_g03.g1 CHROMAT_FILE:
MSMg01no182_g03.g1 PHD_FILE: MSMg01no182_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:07 2005
         (545 letters)



>mm_chr4_87646074_87647023
          Length = 950

 Score =  932 bits (482), Expect = 0.0
 Identities = 530/550 (96%), Gaps = 9/550 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcacttctctgagagtcacatgtctgttctaccattctaagattaagaatcagctct 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcacttgtctgagagtcacatgtctgttctaccattctaagattaagaatcagctct 260

                                                                       
Query: 61  gactgattgcactcacatgcatatgatcatctgaattatgggtagcctaacactccctga 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgagtgcactcacatgcatatgatcatctgaattatgggtagcctaacactccctga 320

                                                                       
Query: 121 aaaaa---ggtgagcctaagacaaccacgaagatctggcactgcacaggcttggcgggca 177
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaggtgagcctaagacaaccacgaagatctggcactgcacaggcttggcgggca 380

                                                                       
Query: 178 gatcatcctcaaga--acccctgtctggcaccatataacacacaagcacagcatagcact 235
           ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcatcttcaagatgacccctgtctggcaccatataacacacaagcacagcatagcact 440

                                                                       
Query: 236 cctgagaccacatctgagaagaccctgggagccactaagatgaccaagcaagtggtggag 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgagaccacatctgagaagaccctgggagccactaagatgaccaagcaagtggtggag 500

                                                                       
Query: 296 aaatggaaaagagaaacagaaggatgtgtgcccaatgcagaactggagggtagtaaggaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatggaaaagagaaacagaaggatgtgtgcccaatgcagaactggagggtagtaaggaa 560

                                                                       
Query: 356 cagcgtaatgtgagtagccagccggtgatgccacctggggctatggtggggttctggtct 415
           |||||| ||||||||||||    |||||||||||||||| |||||||||||| |||||||
Sbjct: 561 cagcgtgatgtgagtagcc----ggtgatgccacctgggactatggtggggtcctggtct 616

                                                                       
Query: 416 gtgctgccaccagcagtcgcatctgggctcatgaccttgcagcactgggggtctgcgacc 475
           |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 617 gtgctgccaccagcagtcacatctgggctcatgaccttgcagcagtgggggtctgctacc 676

                                                                       
Query: 476 accaaaggccaggacatccctggtttgggctgccaccaggggacatgctgatgtttgagg 535
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 677 accaaaggccaggacatccctggtttgggctgccaccagggtacatgctgatgtctgagg 736

                     
Query: 536 gctatgcaga 545
           ||||||||||
Sbjct: 737 gctatgcaga 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 950
Length adjustment: 10
Effective length of query: 535
Effective length of database: 940
Effective search space:   502900
Effective search space used:   502900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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