BAC Information

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BAC

Clone NameMSMg01-182K02
Chromosome4 (Build37)
Map Location 88,946,139 - 88,946,347
singlet/doubletsinglet
Overlap genenone
Upstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a
Downstream geneCdkn2b, LOC664785, Dmrta1, Zfp352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182K02.T7 (MSMg01no182_k02.b1)MSMg01-182K02.TJ (MSMg01no182_k02.g1)
ACCAG375456AG375457
length693766
length of high quality
(start - end)
639 (51 - 689)209 (132 - 340)
definitionCHROMAT_FILE: MSMg01no182_k02.b1 PHD_FILE: MSMg01no182_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:25 2005CHROMAT_FILE: MSMg01no182_k02.g1 PHD_FILE: MSMg01no182_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTGACGAATAGCAAATAACTGAGAAACAACTAAAGA
AATGTTTAACACCCTTAATCATCAGGGAAATTCAAATCAAAACAACCCTG
AGATTCTACCTCACACCAGTCAGAATGGCTAAGACCAAAAACTCAGGTGA
CAGCAGATGCTGGGGAGGATATGGGGAAAGAGGAACACTCCTCCATTGCT
GGTAGGATTCCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTTGTTC
CTCAGAAAATTGGACATAGTATTACCTGAGGACCCAGAAATACCACTCCT
GCGCATATACCTAGAAGATGTTCCAACATGTAATAAGGACACATGCTCCA
TTATGTTCATAGTAGCCTTATTTATAAAAGCCAGAAGCTGGAAAGAACCC
AAATGTCCTTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACAC
AATGGGGATTACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTCGG
CAAATAGAATGAACTAGAAAATATCATCTTGAATGAGGTAACCCAATCAC
AAAAGAACACACATGGTATATATTCACTGATAAGTGGATATTGCCCAGAA
GCTCGGAATACCCAAGATACAATTAACAAACCACATGAAACTC
ACAAACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCCTGAGCCACCCAT
GTGCTGCCCCGGTTCAATGAAAAACTAACCGACAAGCCAGAAGAAAGCTG
GTAAGACAGAAATATTTGGCTTAGTTTTTAAAGTGTTTCTCAATTCATCT
TAGTTCAGATTTTTCTGTTGTCCTTTCTATTTTTCTCCTGTTACTCAGAC
CTAGTTTCTTGTAGTCAACTAGGCAGGCAAGTTCAATATAGAAAACAATG
TGGGAGTTAGCCATGCTACGTTAATGTAAGGACACTGAAAATGTCATTTT
TTAGCCCAGCGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCCC
AAGCCGGAGGATTTTCTCGAGTTGCAGGCCCGCTTGTTCTATACAGTGAG
GTCCAGGAAAGCCCTGTGCCACCTGGAGTAAACCCCGGCCTCTTAAACCT
TTTTTCTCCCTTTAAGAATTAAAACACCTTCCTTTTTTTTTGTTCGCCCA
CATATCTGGGGCCCTTCCGAACCTGTTGTTTTGCCCCCCTTTTCCTCGTC
TTCTTTTCTCCCGCCGCCCTTTACCCTTTTTCCCACCCCTATTTTTTTCT
TATTTTTATCCCGTCCTTTTTAAATATTCCCTGGCTTACCTTCGCGTTAT
AAATCATTTGCCCCATTTTGTTCGCCATTCCCCTCACTTAACCATCTCCA
CACTTCTTCGTTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_k02.g1 MSMg01no182_k02.g1 CHROMAT_FILE:
MSMg01no182_k02.g1 PHD_FILE: MSMg01no182_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:25 2005
         (209 letters)



>mm_chr4_88945939_88946547
          Length = 609

 Score =  389 bits (201), Expect = e-113
 Identities = 207/209 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagccagaagaaagctggtaagacagaaatatttggcttagtttttaaagtgtttctc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 409 acaagccagaagaaagctggtaagacagaaatacttggcttagtttttaaagtgtttctc 350

                                                                       
Query: 61  aattcatcttagttcagatttttctgttgtcctttctatttttctcctgttactcagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aattcatcttagttcagatttttctgttgtcctttctatttttctcctgttactcagacc 290

                                                                       
Query: 121 tagtttcttgtagtcaactaggcaggcaagttcaatatagaaaacaatgtgggagttagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tagtttcttgtagtcaactaggcaggcaagttcaatatagaaaacaatgtgggagttagc 230

                                        
Query: 181 catgctacgttaatgtaaggacactgaaa 209
           |||| ||||||||||||||||||||||||
Sbjct: 229 catgttacgttaatgtaaggacactgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)