TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCTCCACTGACACGTATTGAGCTGGTCCAAGAAATATTTCTGG
AACCAGCACAATTTAGCCGCGGGACTGTAATAGGACATGGAATCAGCAGA
CACCTTAGACTTGAGATGCCGTTCAATCTAAGAATGTGAAAGACTCAGCA
GGCAAAACGAGAAAGACGCCTCTGCTTTGGAACTTTGAGGCGTTTTTCTG
CCTTACATTTTAATTGGCTGTTTAACTTTGTATTAAACAAAACTGTGATG
GTTAAGAATTCTTCTTATTCTGATCCTTTAGAGCTAAGAAAACGAAGTTT
GTGACTGTATGCCTCTTACAGAGAACAGTCCTGCATCAAAGCTACTTCAT
CAAAATGAACTTTAAGAAACATAACCCTGTGCAGAACTCAAGGGGGCTGC
TGTGGTTGTTCTCATGTGTCTGTTTCTGGACAGCTCAGTCCTAAGTCATG
TATTTATTCCTTCAGCAGGCATCATTTGCTGTATATACACAGTAATAGTT
AGCATACAGCAGTCTTCTTAAATATGAGTTATTCAGCCCGGTGCTCACCA
GAAGTTAGCAGTTACGTTTTCTCAGATTTTCTGGTTCCACTTTAAGACAG
CCCCCCTGATATAATGACATGACAATTGTCCTGACTTGACCGCTCTAGGA
GAAAACCTAGTGTTTCATTCTTACCC

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGGAGGGTTGTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTGGCGCGGGGCAAGACAACCTGATCTTCCC
CTTTCCACAAACTCAATAACTTGCAAGTCCACAATTGTAATGGCGTATCT
AGCCATGCCCCACCATAAAGAATTACCCCTGAGATAACTATGTCCTACAC
CAAGGGCAGACTCTGGTGACTGGCACACCCTCATATGTGTTTCTAGGAAA
TAAAAACAAACGGCCACCTGTATTCTTTTTTATCTCCTGCTACCCCGTCC
CCTTCCCCCCCCGACTTTCCCCCCCCCCCCAGCACCAACAAGTTTTAATT
TAATCTATTTTCTTTTTCCCAATACCACCCCCCCACACCCCGCTTCAAAC
AACCAACCTTCTAACACAAACACCATTCCCCCCCCCTTCCCACCCACCTA
ATCATCGCCCGCATTTCGTTCATCATATCATCCCCCTAACCCTCCCTCTC
TTCGTCCCTTCTCCTCCCCTCCCTCTCGCTTTCTACCATGTCATAATCTA
TTTTATAACCTCCCCCCCCCCTCATCCCTTTCCCCCCCCCCACCTTCACC
TCCCCCGCTTCCTTTCTCCCTCCTCTTACGATACCCTATTGACCTGACAC
TAATTCTCATTTTCTCCTCCTATCGCCCCGATATACCTTATACCTCCCCC
CCATTCTTCCTTCCCCCTTTAACAATTTCACCATACGCTCCC

Query= MSMg01no182_m01.b1 MSMg01no182_m01.b1 CHROMAT_FILE:
MSMg01no182_m01.b1 PHD_FILE: MSMg01no182_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:35 2005
         (468 letters)



>mm_chr4_32041531_32042398
          Length = 868

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctccactgacacgtattgagctggtccaagaaatatttctggaaccagcaca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattctcctccactgaaacgtattgagctggtccaagaaatatttctggaaccagcaca 609

                                                                       
Query: 65  atttagccgcgggactgtaataggacatggaatcagcagacaccttagacttgagatgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atttagccgcgggactgtaataggacatggaatcagcagacaccttagacttgagatgcc 549

                                                                       
Query: 125 gttcaatctaagaatgtgaaagactcagcaggcaaaacgagaaagacgcctctgctttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gttcaatctaagaatgtgaaagactcagcaggcaaaacgagaaagacgcctctgctttgg 489

                                                                       
Query: 185 aactttgaggcgtttttctgccttacattttaattggctgtttaactttgtattaaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactttgaggcgtttttctgccttacattttaattggctgtttaactttgtattaaacaa 429

                                                                       
Query: 245 aactgtgatggttaagaattcttcttattctgatcctttagagctaagaaaacgaagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aactgtgatggttaagaattcttcttattctgatcctttagagctaagaaaacgaagttt 369

                                                                       
Query: 305 gtgactgtatgcctcttacagagaacagtcctgcatcaaagctacttcatcaaaatgaac 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 gtgactgtatgcctcttacagagaaaagtcctgcatcaaagctacttcatcaaaatgaac 309

                                                                       
Query: 365 tttaagaaacataaccctgtgcagaactcaagggggctgctgtggttgttctcatgtgtc 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttaagaaatataaccctgtgcagaactcaagggggctgctgtggttgttctcatgtgtc 249

                                                       
Query: 425 tgtttctggacagctcagtcctaagtcatgtatttattccttca 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtttctggacagctcagtcctaagtcatgtatttattccttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)