Query= MSMg01no183_g05.b1 MSMg01no183_g05.b1 CHROMAT_FILE:
MSMg01no183_g05.b1 PHD_FILE: MSMg01no183_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:23 2005
(241 letters)
>mm_chr4_139486623_139487263
Length = 641
Score = 408 bits (211), Expect = e-118
Identities = 233/241 (96%), Gaps = 5/241 (2%)
Strand = Plus / Minus
Query: 4 ggaattcaagtccctcacctttggccatttatcatctatgacgctgaggttttgtagaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggaattcaagtccctcacctttggccatttatcatctatgacgctgaggttttgtagaat 296
Query: 64 ctgctgtcatggatcccggactgacttccggcagtcaaatcattttctccttctgctcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgctgtcatggatcccggactgacttccggcagtcaaatcattttctccttctgctcct 236
Query: 124 cccttgtcttgactagattctgtgagcacaatctcccctcccctctccttccctcccctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cccttgtcttgactagattctgtgagcacaatctcccctcccctctccttccctcccctc 176
Query: 184 ccctcctctcccctcccctctccacctcttc-tctccttctcctc--ctctccttctcct 240
||||||||||||||||||||||| || | || |||||| |||||| ||||||| |||||
Sbjct: 175 ccctcctctcccctcccctctcctccccctcctctcct-ctcctctcctctcct-ctcct 118
Query: 241 c 241
|
Sbjct: 117 c 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no183_g05.g1 MSMg01no183_g05.g1 CHROMAT_FILE:
MSMg01no183_g05.g1 PHD_FILE: MSMg01no183_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:23 2005
(287 letters)
>mm_chr4_139374525_139375211
Length = 687
Score = 549 bits (284), Expect = e-161
Identities = 284/284 (100%)
Strand = Plus / Plus
Query: 1 tgtaataattcatatccttcccccatatctgaaaaaaagaggggagggcattccctgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaataattcatatccttcccccatatctgaaaaaaagaggggagggcattccctgttc 260
Query: 61 atttttggacgccaggaagaagatgagagaaagggaattggctcctaggtcagggagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttggacgccaggaagaagatgagagaaagggaattggctcctaggtcagggagggc 320
Query: 121 caaagcttaagccaaggtgcctttcaggtgcagcctccctcctcctcctcctccccctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagcttaagccaaggtgcctttcaggtgcagcctccctcctcctcctcctccccctcc 380
Query: 181 tcctcctcctctccctcctcctcctcctcctccttcttcctccctctctctcccccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcctcctctccctcctcctcctcctcctccttcttcctccctctctctcccccttcc 440
Query: 241 cctccctctccccttctttactttttttggggccctggaaaggg 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccctctccccttctttactttttttggggccctggaaaggg 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
