BAC Information

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BAC

Clone NameMSMg01-184D11
Chromosome4 (Build37)
Map Location 32,711,916 - 32,712,198
singlet/doubletsinglet
Overlap geneCasp8ap2
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10
Downstream geneMdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184D11.T7 (MSMg01no184_d11.b1)MSMg01-184D11.TJ (MSMg01no184_d11.g1)
ACCAG376570AG376571
length714725
length of high quality
(start - end)
314 (61 - 374)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no184_d11.b1 PHD_FILE: MSMg01no184_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005CHROMAT_FILE: MSMg01no184_d11.g1 PHD_FILE: MSMg01no184_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACACCCNNNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAATCAATGACAGAACTCCATCTTTCTGTTT
TTTTCCTATAGAGAATATGTTTTCAAGGTGACGGGGGTTAGAGGGACTCA
GAAGATGGCTCATTGATAAGTTGCTTCCTATGCAGCAGGAAGGCCTGACT
TAGGATTGCCAGCACCCACATAAAAGTTAAGTGTGACAACACATGCCTAT
AATCCCAGGGTTGGAGAGCGGGAGGCAGAAGAAACCTGGGGTTTGATGGC
CAGCCTTGCTGTGAGTTCCTGGTTCAGTGAAAGACCCTTTCTTTCTCAAA
AAATAAATGAACAAATAAAGTATATTATTCTACCGCCCACCCCCAAAGCC
AACCTCATGCTTCCACACACACATGCATCTGCCCACATTCATGAACACAT
ATATATTCGCTCGCAAACTAAAAACATAAGATAGCACAGAGAAATAAAAG
AAACTGCAAGTAGCTCACCTGGACTGACGTTCTGGGATAACTTCTGGGCA
GCTGCAAACATTTTGGCTACAGTTTCTAGAAACTAAACAGAACCAGCACA
AATTAATACAACTACTTAAGCTCCCCTTTCTTTTCTTTTTTTTTTAAAAG
ATTTATTTATTATCATATGCAAGTACATTGTAGCTGTCTTCAGACACTCC
AGAAGAGGAATCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGAACTGCCACTGAGCCATCT
CTTTAGCCCCTGGCTGACCTTTATTGTGTGCTTTTAAGTCTCTAAATGTA
AGTAATCAAGGTAGCAATTTTGCTGACATGATAGGTCATAATATCTGTTG
TCATATTCCAAATAAATATGTTACTTTTGAAGTAAAACTTTTTGTTTGTT
TTGGTGTTTTTGAGGCAGGATTTCTCTGTGTAGCCCTGACTATCCTGGAT
TTCACTCTGTAGACAAGGTTGGCCTCAAAGGAACTTAAGAGATCTGCCTG
TCTCTGTTTCCCAAGTGCTCGCCCATTTAAGGCAAGTGCCACCACTGCCT
TACTTGGAAGTAAATATCTTTTAATGAATTTATGCTTATTTATTATTGCT
TAACTGGATTTAATTATTCATTCCTGGATGAGGTGGAACATGCCTATAGT
TTGAGCACTTGGGAGGCAGGAGAACTGAGTTCTAAGGCCAACTTGGGATA
TGTGGGAGACTTTGGCATAGAGAAGCGACAGGGGCAGAGGAAGGAGGGAA
TGGTGGCAGTGGGGTGAACAATGACACAAGACATGGTAATAAAATAAACT
CATAAAATAGTTGTTTTGCAGGGAATTAGGGGGGAAAGGGGAGTCCAGAG
CCTCTTGCATGTTAGGTAATTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_d11.g1 MSMg01no184_d11.g1 CHROMAT_FILE:
MSMg01no184_d11.g1 PHD_FILE: MSMg01no184_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:29 2005
         (283 letters)



>mm_chr4_32711716_32712400
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 276/285 (96%), Gaps = 6/285 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaactgccactgagccatctctttagcccctggctgacctttattgtgtgctttta 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 201 cctggaactgccactgagccatctctttagcccctggttgacctttattgtgtgcttt-- 258

                                                                       
Query: 61  a----gtctctaaatgtaagtaatcaaggtagcaattttgctgacatgataggtcataat 116
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attgtgtctctaaatgtaagtaatcaaggtagcaattttgctgacatgataggtcataat 318

                                                                       
Query: 117 atctgttgtcatattccaaataaatatgttacttttgaagtaaaactttttgtttgtttt 176
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atctgtcgtcatattccaaataaatatgttacttttgaagtaaaactttttgtttgtttt 378

                                                                       
Query: 177 ggtgtttttgaggcaggatttctctgtgtagccctgactatcctggatttcactctgtag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtgtttttgaggcaggatttctctgtgtagccctgactatcctggatttcactctgtag 438

                                                        
Query: 237 acaaggttggcctcaaaggaacttaagagatctgcctgtctctgt 281
           ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 acaaggttggcctcaaaggaactcaagagatctgcctgtctctgt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)