BAC Information

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BAC

Clone NameMSMg01-184D12
Chromosome4 (Build37)
Map Location 144,465,335 - 144,465,615
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
Downstream geneDhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184D12.T7 (MSMg01no184_d12.b1)MSMg01-184D12.TJ (MSMg01no184_d12.g1)
ACCAG376572AG376573
length733760
length of high quality
(start - end)
316 (60 - 375)281 (71 - 351)
definitionCHROMAT_FILE: MSMg01no184_d12.b1 PHD_FILE: MSMg01no184_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005CHROMAT_FILE: MSMg01no184_d12.g1 PHD_FILE: MSMg01no184_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTNNNAGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCTAG
GACATTGGAACATTGGAATAGGCTTAGCTATGTCAGAATTCAATCTTAAA
AGGCACTTATAATAAGATAATACTAAGAGAGCACGTGGATCCATACACCA
GACTAATGTGGGAATAGGGTTTGAGTATATGAGTTAAAGAGAACGCCAGA
CATCGGGAGGTGAGTTTTCATGAAACTCTCTGCCTCGTGAGTAGCTTCCA
GGCCTCTCGGCCTGTCAAGCTGACTCAACCAGAGTGTGTAGCATTATTGA
AAAAATATTTTTTTTCGTTTGTTTTTCTTCCCCCCCCCCCTTTTATTACG
TATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCCCCCCG
ACTCCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTAC
TGGGGCATATAACGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGG
CCGACTAGGTCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGG
GGTACTGGTTAGTTCATAACGTTGTTCCTCCGATAGGGTTGCAGATCTCT
TTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATC
CATCCAATAGTTGACTGTGAGCATCCACTTCTG
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGCTCTTGATAGTGACCCCAAGGGATCT
GCTCCCAAGGCTGGGGTAGTTGGGAGGATTTACACTGCAGCATACAGGGC
CTGGCCTAGCCCACAGAATGGGTTGGAATGGGGCAGGGGGTTCCGGCAGA
TGCATCACCATAGCCTGGTGATACCAGGGCATTCTTATAGGGCATGAGCC
TCACCATATCTTCCCCAGATACTTTGGGCCAAGCACAACAAGTTATTGGG
AAATGCTGTCTTCCTCCTCCTCTCTCCTGCCTCTCCCAAGATATTGCAAG
ATGGATATTTTCTGCCTGCCCCCCCCCGCAATTACTTGGTGATTGAGGCT
GACAGCTGACTGCCGATTGAGAATGAACTCTCTGGTACAACTGTTCCTGC
AAGGCTGTGTGTGTGTGTCTGATTGAATGTTTCCAGGTTCTTTGCCTATC
ACTTTAATAACTGACAATGATGCCTACATATATTTGCCAAGGCATAGAAA
TTTATTACAAATGAAGGACTCATATTGTATTTATCGCTATTTTATCTTCA
TTATTTACTTCCTGGCCCATATCGAATAGAATTTCCCAAGAGGTTTATTC
CATGCGCCATTTACCGCCCTCCCCTAATGGTCTCTACCGCCCCGCTTTTC
TCTTGTTCTTCGCTTATTTATGTCATCCCTCTTTTATCGAATTTTCTTCC
TCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_d12.g1 MSMg01no184_d12.g1 CHROMAT_FILE:
MSMg01no184_d12.g1 PHD_FILE: MSMg01no184_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:29 2005
         (281 letters)



>mm_chr4_144465135_144465815
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggctcttgatagtgaccccaagggatctgctcccaaggctggggtagttgggaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttggctcttgatagtgaccccaagggatctgctcccaaggctggggtagttgggaggatt 422

                                                                       
Query: 61  tacactgcagcatacagggcctggcctagcccacagaatgggttggaatggggcaggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacactgcagcatacagggcctggcctagcccacagaatgggttggaatggggcaggggg 362

                                                                       
Query: 121 ttccggcagatgcatcaccatagcctggtgataccagggcattcttatagggcatgagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttccggcagatgcatcaccatagcctggtgataccagggcattcttatagggcatgagcc 302

                                                                       
Query: 181 tcaccatatcttccccagatactttgggccaagcacaacaagttattgggaaatgctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaccatatcttccccagatactttgggccaagcacaacaagttattgggaaatgctgtc 242

                                                    
Query: 241 ttcctcctcctctctcctgcctctcccaagatattgcaaga 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcctcctcctctctcctgcctctcccaagatattgcaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)