MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-184D14
Chromosome	4 (Build37)
Map Location	46,941,327 - 46,941,632
singlet/doublet	singlet
Overlap gene	Gabbr2
Upstream gene	Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream gene	Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tdrd7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100121 MGI:2140279
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmod1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21916 MGI:98775
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC057893 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272027 MGI:3039624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AU014645 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433702 MGI:2140419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xpa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22590 MGI:99135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC624430 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 264 ESTs, 6 Proteins pseudo : _no_value

name	LOC666379 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666379
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC666389 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins pseudo : _no_value

name	Foxe1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110805 MGI:1353500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5830415F09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74753 MGI:1922003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hemgn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93966 MGI:2136910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040643 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040643
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Anp32b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67628 MGI:1914878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nans (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94181 MGI:2149820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74735 MGI:1921985
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Coro2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107684 MGI:1345966
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbc1d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381605 MGI:2652885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabbr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242425 MGI:2386030
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anks6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75691 MGI:1922941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435781 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Galnt12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230145 MGI:2444664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col15a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12819 MGI:88449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tgfbr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21812 MGI:98728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666236 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666236
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	LOC666473 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666473
definition	note : microfibrillar-associated protein 1 pseudogene pseudo : _no_value

name	Alg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56737 MGI:1914731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sec61b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66212 MGI:1913462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tdrd7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122662 GeneID:100121 MGI:2140279
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 7 transcript_id : NM_146142.1

name	Tmod1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922650 GeneID:21916 MGI:98775
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tropomodulin 1 transcript_id : NM_021883.2

name	BC057893 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922727 GeneID:272027 MGI:3039624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC057893 transcript_id : NM_173033.3

name	AU014645 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922626 GeneID:433702 MGI:2140419
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AU014645 transcript_id : NM_001033201.3

name	Xpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7106448 GeneID:22590 MGI:99135
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : xeroderma pigmentosum, complementation group A transcript_id : NM_011728.1

name	Foxe1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34304110 GeneID:110805 MGI:1353500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box E1 (thyroid transcription factor 2) transcript_id : NM_183298.1

name	5830415F09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347462 GeneID:74753 MGI:1922003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5830415F09 gene transcript_id : NM_029086.2

name	Hemgn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131169 GeneID:93966 MGI:2136910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hemogen transcript_id : NM_053149.2

name	Anp32b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363533 GeneID:67628 MGI:1914878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acidic nuclear phosphoprotein 32 family, member B transcript_id : NM_130889.2

name	Nans (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802602 GeneID:94181 MGI:2149820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-acetylneuraminic acid synthase (sialic acid synthase) transcript_id : NM_053179.3

name	Trim14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349730 GeneID:74735 MGI:1921985
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 14 transcript_id : NM_029077.2

name	Coro2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802181 GeneID:107684 MGI:1345966
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coronin, actin binding protein 2A transcript_id : NM_178893.3

name	Tbc1d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111038125 GeneID:381605 MGI:2652885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 2 transcript_id : NM_198664.3

name	Gabbr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487262 GeneID:242425 MGI:2386030
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA) B receptor 2 transcript_id : NM_001081141.1

name	Anks6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906180 GeneID:75691 MGI:1922941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and sterile alpha motif domain containing 6 transcript_id : NM_001024136.1

name	Galnt12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802625 GeneID:230145 MGI:2444664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 transcript_id : NM_172693.3

name	Col15a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134288881 GeneID:12819 MGI:88449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XV transcript_id : NM_009928.3

name	Tgfbr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254607 GeneID:21812 MGI:98728
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transforming growth factor, beta receptor I transcript_id : NM_009370.2

name	LOC666236 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371752 GeneID:666236
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC666236, transcript variant 1 transcript_id : XM_988573.1

name	LOC666236 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371754 GeneID:666236
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC666236, transcript variant 2 transcript_id : XM_988612.1

name	Alg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560365 GeneID:56737 MGI:1914731
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase) transcript_id : NM_019998.2

name	Sec61b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378097 GeneID:66212 MGI:1913462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Sec61 beta subunit transcript_id : NM_024171.2

name	Tdrd7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122663 CCDS:CCDS18142.1 GeneID:100121 MGI:2140279
definition	codon_start : 1 product : tudor domain containing 7 protein_id : NP_666254.1

name	Tmod1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11230778 CCDS:CCDS18143.1 GeneID:21916 MGI:98775
definition	GO_component : GO:0005856 - cytoskeleton [Evidence TAS]; GO:0030016 - myofibril [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005523 - tropomyosin binding [Evidence IEA] GO_process : GO:0030241 - muscle thick filament assembly [Evidence IMP]; GO:0030239 - myofibril assembly [Evidence IMP] codon_start : 1 note : erythrocyte tropomodulin product : tropomodulin 1 protein_id : NP_068683.1

name	BC057893 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922728 GeneID:272027 MGI:3039624
definition	codon_start : 1 product : hypothetical protein LOC272027 protein_id : NP_766621.3

name	AU014645 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922627 CCDS:CCDS18145.1 GeneID:433702 MGI:2140419
definition	GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA] codon_start : 1 note : nuclear cap binding protein subunit 1 product : nuclear cap binding protein subunit 1, 80kDa protein_id : NP_001028373.2

name	Xpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106449 CCDS:CCDS18146.1 GeneID:22590 MGI:99135
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IMP]; GO:0006289 - nucleotide-excision repair [Evidence IMP]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IMP] codon_start : 1 exception : mismatches in translation product : xeroderma pigmentosum, complementation group A protein_id : NP_035858.1

name	Foxe1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34304111 CCDS:CCDS18147.1 GeneID:110805 MGI:1353500
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0031069 - hair follicle morphogenesis [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : forkhead box E1 (thyroid transcription factor 2) protein_id : NP_899121.1

name	5830415F09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626025 CCDS:CCDS18148.1 GeneID:74753 MGI:1922003
definition	GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : hypothetical protein LOC74753 protein_id : NP_083362.1

name	Hemgn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716441 CCDS:CCDS18150.1 GeneID:93966 MGI:2136910
definition	GO_component : GO:0005654 - nucleoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA] codon_start : 1 note : nuclear protein; negative differentiation regulator product : hemogen protein_id : NP_444379.1

name	Anp32b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18700032 CCDS:CCDS18151.1 GeneID:67628 MGI:1914878
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0000084 - S phase of mitotic cell cycle [Evidence ISS] codon_start : 1 note : acidic protein rich in leucines; proliferation related acidic leucine rich protein PAL31 product : acidic nuclear phosphoprotein 32 family, member B protein_id : NP_570959.1

name	Nans (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716467 CCDS:CCDS18152.1 GeneID:94181 MGI:2149820
definition	GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0019007 - N-acetylneuraminic acid phosphate synthase activity [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016051 - carbohydrate biosynthesis [Evidence IEA] codon_start : 1 note : N-acetylneuraminic acid 9-phosphate synthetase; N-acetylneuraminic acid phosphate synthase; sialic acid synthase product : N-acetylneuraminic acid synthase (sialic acid synthase) protein_id : NP_444409.1

name	Trim14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39540508 CCDS:CCDS18153.1 GeneID:74735 MGI:1921985
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : PU.1 binding protein Pub protein_id : NP_083353.1

name	Coro2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794278 CCDS:CCDS18154.1 GeneID:107684 MGI:1345966
definition	GO_function : GO:0003779 - actin binding [Evidence ISS] [Evidence IEA]; GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA] GO_process : GO:0006542 - glutamine biosynthesis [Evidence IEA]; GO:0006807 - nitrogen compound metabolism [Evidence IEA] codon_start : 1 note : coronin 4 product : coronin, actin binding protein 2A protein_id : NP_849224.1

name	Tbc1d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111038126 CCDS:CCDS18155.1 GeneID:381605 MGI:2652885
definition	codon_start : 1 note : likely ortholog of H. sapiens TBC1 domain family, member 2 (TBC1D2) product : TBC1 domain family, member 2 protein_id : NP_941066.3

name	Gabbr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487263 GeneID:242425 MGI:2386030
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0004965 - GABA-B receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : GABA-B receptor 2; gamma-aminobutyric acid type B receptor, subunit 2; G protein-coupled receptor 51; ortholog of human G protein-coupled receptor 51 GPR51 product : gamma-aminobutyric acid (GABA) B receptor 2 protein_id : NP_001074610.1

name	Anks6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906181 CCDS:CCDS18157.1 GeneID:75691 MGI:1922941
definition	codon_start : 1 note : ankyrin repeat domain 14 product : sterile alpha motif domain containing 6 protein_id : NP_001019307.1

name	Galnt12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370010 CCDS:CCDS18158.1 GeneID:230145 MGI:2444664
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004653 - polypeptide N-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : mpp-GalNAc-T12 product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 protein_id : NP_766281.1

name	Col15a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134288882 CCDS:CCDS18159.1 GeneID:12819 MGI:88449
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0031012 - extracellular matrix [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 note : type XV collagen; procollagen type XV product : procollagen, type XV protein_id : NP_034058.2

name	Tgfbr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678323 CCDS:CCDS18160.1 GeneID:21812 MGI:98728
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004702 - receptor signaling protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0005024 - transforming growth factor beta receptor activity [Evidence IDA]; GO:0004675 - transmembrane receptor protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0009790 - embryonic development [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0008354 - germ cell migration [Evidence IMP]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IDA]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence IEA] codon_start : 1 product : transforming growth factor, beta receptor I protein_id : NP_033396.1

name	LOC666236 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371755 GeneID:666236
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_993706.1

name	LOC666236 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371753 GeneID:666236
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_993667.1

name	Alg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560366 CCDS:CCDS18161.1 GeneID:56737 MGI:1914731
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0009058 - biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : alpha-1,3-mannosyltransferase ALG2 protein_id : NP_064382.2

name	Sec61b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13324684 GeneID:66212 MGI:1913462
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : Sec61 beta subunit protein_id : NP_077133.1

name	LOC666379 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666379
definition	number : 3 pseudo : _no_value

name	LOC666379 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666379
definition	number : 2 pseudo : _no_value

name	LOC666379 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666379
definition	number : 1 pseudo : _no_value

name	LOC100040643 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040643
definition	number : 2 pseudo : _no_value

name	LOC100040643 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040643
definition	number : 1 pseudo : _no_value

name	LOC435781 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435781
definition	number : 2 pseudo : _no_value

name	LOC435781 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435781
definition	number : 1 pseudo : _no_value

name	LOC624430 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252370 GeneID:624430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 264 ESTs, 6 Proteins product : similar to OTU domain containing 6B pseudo : _no_value transcript_id : XR_031787.1

name	LOC666389 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252371 GeneID:666389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_031797.1

clone name	MSMg01-356N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122E10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-547N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181K07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-128N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293L19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-295J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080N22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-184D14.T7 (MSMg01no184_d14.b1)	MSMg01-184D14.TJ (MSMg01no184_d14.g1)
ACC	AG376576	AG376577
length	740	1,437
length of high quality (start - end)	310 (57 - 366)	---
definition	CHROMAT_FILE: MSMg01no184_d14.b1 PHD_FILE: MSMg01no184_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:30 2005	CHROMAT_FILE: MSMg01no184_d14.g1 PHD_FILE: MSMg01no184_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:30 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	GTTTNTTTGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXCGCGGAATTCCAGGCAGAACATAGGCAGGCTAGGCTGGGGCACT CAAAGCCAATGGACCTTATCATGGCCTCTCTTGTCAAGGAGAAAAGCTAC TAAGGGTTTGTGTCACATATGAAAACCACCACATCAAATATGCCAAGAAG CTGCATTTATTGAGCACTTCCTGTGTACCAGACATTTGACATATTTTAAC TCAACTTCCCAGATACTAGGAAGGTACTGTGGCCACATTTGCTTTGCAGA TAAGGAGCCTGAGAGAGGCTAAGAAAGGTTCCTAAAGCCCCAAAGCTTCA TTTATTGTGATTCCTTNCCATGGCTCCGAAGACGGNANCGTGGCTTTTGT TGGGTTGGGGGCAGAAATGGCTCAGGCAAAATCAATTGAAAACCTGGTGC ACCCTAGTGATCGCCATCTGGGCTCAGCCAGGAGCCTTCTCTTCTCTGTT CCTAAAAATCAGTCAAGGCAGCCGGGACTGCTCATGCTGAGTCACTGTTC TGGTCCAGGCTAATTCTGCTTCATAACCTTGTATCTGAAGCCAGTGGTGC AGAGGACTTTAAATTAGCGATACAATTTCAACCCAATTGCTAAACTGCCT AAATTATCTAGTTTGCTCATTGCAACTTGAATGCATGCATAATTAATTTT TCTAAAGCCTGGACTAAAAGCTGCTGATATCAGATCTTTT	GGGGGTAAGGTCCTTGGTCGGGTCCGCCCTAGGTTCCGTCTCGACCATTT TACGGTTGAAACCCTAAATGAAAAGGGGTATCCGCCGGGGAAATTCCTCG GGTGGGAAGAAAAAAAAAAAAGAGGTAAGGTTGGGGGCTAGCTTTGGGAG AACGAGGGAAATATAAAAATATTACACACCCACACCCCCACGCAGAAGAA TAATAGGGGGGTCTACTTACACGAGTGACCTCTTCTTTATGCGAGTACTG CCCGCCCAGCGGGGTGTGGGTTTGGTGGCGAGGGCCCGACTAAATCATCT CGGTGAGGCGCGCGCACGAAATTTATTATTAGACATATAAATGACACTCT CTCACATCTCACCATCAACGTCTATAAACAAAAAATAGTGTGGGCTTGAG TTGTGTAATATTGCTGGTGGGTGCCGGCGCGGACTACGGTAGATCGTTTT TTCTGTTTTGCGCGGCGCCGCTTCGGCTCGCTCACTCTATTCTACATTCT AGAGTAATAAACGCGCTCCCACCTCAACCCCCCAACCTTATTTCTTATAT TAGGACTATAANGCTGTGGGTGCTATGGTGAGCTGCCGACCTTGTATTCA CATATGATTATAATATTTTTTTGTTTATTTTTGCCCCTCTCCACCGCCCC CCCCCCCCCACCAGGTAGATTATTTTTTTATTGTTTAGTGCTTTGTGGTG GGTCCGCACTATTGCGTCTCATGTGTCTGTCTCGATCATACTATAGTAGA GAACAACATACACTCGGTGCCTGTATGAGTGGGTGGATTCGTATGGAGAC GTTGTGATAGCAAGTATGGTTGCTGACGACGAGTCGTAGAGTGGTGTGTG TTGTAGATGATTGGGCGGATCCAGAGACGGAGTCAGAGACGTGACTCACG TGGGTTGAGTGCGGTAGGAATGGCATACGAGCTGCAGAGCGCGAGCACAT GNAGAACCACAGATGTGAATGTAAGGGAGCATGACGTGCGAGCAATGATG CGATGATATGAGTGGATGTGGCGCACGCGGTATGGCATGAGTANACAGTA AGCACGACTGGATACCAGAGAGANGAGAAGAGAACGCAGCTACAGAACAT AATGCGACAACTACCTGTGAGATGTGCTCAGACGCTGATGAATGGTCTAC ACGAGATTAGACTGAGCCACGCCGCGCGTGCCAACACACGGACGACATAC GTGACATGAAAGTAAGAAGATATCGTGCATAGTGAAGAAATACAACAGGA GAAGCCACGAGAAGTCGANAGAACACACTCAGAAGAGATTACATACGCAG GACANAACTACGGCCAATAGAGACACACGATCACCTACAAGAANAGANAT ATAACTATNATATACTATCATACAAGATAATCAAGAGATATANANCAATC AAACAATGACCGACGAGAGACCAGATACTATATTATG
quality values	Open. Hide. 6 6 6 3 0 3 6 6 6 8 8 8 10 12 12 10 10 17 21 23 29 41 41 41 28 23 23 18 23 23 22 26 28 39 43 43 28 24 24 24 24 35 44 43 43 39 39 39 40 47 32 32 20 20 26 26 42 41 68 68 40 40 40 40 41 42 50 50 50 47 48 48 48 47 48 54 50 57 57 57 68 57 57 57 57 57 57 54 54 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 57 57 57 57 57 57 57 68 57 57 57 57 54 57 57 68 68 44 57 43 38 38 20 36 43 57 57 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 57 57 57 68 68 68 68 68 57 57 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 59 57 57 48 48 48 57 59 59 59 68 68 68 68 57 57 68 68 68 59 59 59 57 57 59 59 59 59 59 59 68 68 59 59 68 68 68 68 68 57 57 57 54 54 59 59 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 50 53 34 41 18 15 18 16 12 8 8 8 8 8 10 24 24 39 39 47 48 48 48 59 59 59 59 59 59 59 59 59 57 57 57 57 53 48 59 48 46 41 27 32 15 15 11 3 0 3 6 6 6 6 6 7 9 10 9 9 9 9 9 9 9 9 3 0 3 0 3 9 9 12 23 23 37 39 48 59 59 59 57 48 48 48 59 59 59 59 57 57 48 59 59 59 50 50 50 50 47 47 47 30 27 12 9 9 10 10 12 12 6 6 6 6 6 6 6 6 9 9 8 9 13 23 21 28 12 12 11 15 15 19 19 19 16 16 13 23 24 36 43 57 57 57 57 57 57 44 43 39 30 30 42 40 48 40 43 43 46 57 43 43 35 35 35 59 59 59 57 57 57 59 59 68 68 68 59 59 59 59 50 50 50 50 50 57 59 59 39 39 28 28 33 28 37 37 59 39 46 46 41 41 39 39 26 26 32 37 37 41 47 47 59 59 59 48 48 48 57 42 38 36 31 31 36 36 43 47 48 48 42 47 39 43 43 47 47 48 48 48 48 57 59 59 57 43 43 40 37 37 32 30 30 30 37 30 27 32 32 32 33 39 40 41 41 41 39 31 19 25 12 12 12 22 22 30 35 35 34 33 19 19 17 24 25 39 39 39 42 42 39 47 39 27 27 14 14 22 25 23 24 24 19 22 22 25 22 23 20 20 19 28 27 28 30 32 33 37 37 22 15 10 10 10 19 23 37 31 31 39 37 37 36 36 29 23 15 11 10 12 15 13 8 8 8 11 13 28 28 39 34 39 35 31 31 32 37 37 37 31 28 32 28 23 23 23 28 23 23 23 24 20 24 25 30 20 23 19 19 13 13 15 16 18 12 12 12 12 12 16 18 30 34 39 38 31 31 30 30 24 24 23 24 28 18 18 9 9 9 20 18 12 12 12 26 26 37 41 43 37	Open. 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Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no184_d14.b1 MSMg01no184_d14.b1 CHROMAT_FILE:
MSMg01no184_d14.b1 PHD_FILE: MSMg01no184_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:30 2005
         (310 letters)



>mm_chr4_46941286_46941995
          Length = 710

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggcagaacataggcaggctaggctggggcactcaaagccaatggaccttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggaattccaggcagaacataggcaggctaggctggggcactcaaagccaatggaccttat 288

                                                                       
Query: 64  catggcctctcttgtcaaggagaaaagctactaagggtttgtgtcacatatgaaaaccac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 catggcctctcttgtcaaggagaaaagctactaagggtttgtgtcacatatgaaaaccac 228

                                                                       
Query: 124 cacatcaaatatgccaagaagctgcatttattgagcacttcctgtgtaccagacatttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cacatcaaatatgccaagaagctgcatttattgagcacttcctgtgtaccagacatttga 168

                                                                       
Query: 184 catattttaactcaacttcccagatactaggaaggtactgtggccacatttgctttgcag 243
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 167 catattttaactcaacttcccagatactgggaaggtactgtggccacatttgctttgcag 108

                                                                       
Query: 244 ataaggagcctgagagaggctaagaaaggttcctaaagccccaaagcttcatttattgtg 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 107 ataaggagcctgagagaggctaagaaaggtccctaaagccccaaagcttcatttattgtg 48

                 
Query: 304 attcct 309
           ||||||
Sbjct: 47  attcct 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information