Query= MSMg01no184_p05.b1 MSMg01no184_p05.b1 CHROMAT_FILE:
MSMg01no184_p05.b1 PHD_FILE: MSMg01no184_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:32 2005
(524 letters)
>mm_chr4_119789880_119790804
Length = 925
Score = 756 bits (391), Expect = 0.0
Identities = 490/551 (88%), Gaps = 48/551 (8%)
Strand = Plus / Plus
Query: 4 ggaattcaaaaatagttgcccaaggcatgcttggcagctgtgtgtataaacacacgcgag 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 193 ggaattcaaaaatagttgcccaaggcatgcttggcagctgtgtgtataaacacatgcaag 252
Query: 64 cgcgc--gagcgcacacacacacacacacacacacacacacacacacacacacacacaca 121
||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 253 cgcgctcg-g-gcacacacacacacacacacacacacacacacacac------------- 297
Query: 122 caccacccaaacccagaccaaaagacaaagagctacttcctatccccacaggacgtggga 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ---cacccaaacccagaccaaaagacaaagagctacttcctatccccacaggacgtggga 354
Query: 182 gctccagaactggggctgctggggctgctggggctgctggggctgct------------- 228
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gctccagaactggggctgctggggctgctggggctgctggggctgctggggctgctgggg 414
Query: 229 --------------ctgctgaacccc-accgcctggctctaaatctcagtcagggtacct 273
|||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 415 ctgctggggctgctctgctgaacccctactgcctggctctaaatctcagtcagggtacct 474
Query: 274 ggtcttaagattccctgcagctaatacattccaaattcctagagttgcctttttctttaa 333
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 475 ggtcttaagattccctgcagctaatacattccaaattcctagagttgtctttttctttaa 534
Query: 334 tggaaacaccagactagctgacactctggctagcacccactgcaggggacaggtggacag 393
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 535 tggaaacaccagactagctgacactctggctagtagggactgcaggggacaggtggacag 594
Query: 394 cagggttttgagaagctacatgggtccccggagtcatgggtcatctccaccaagcctgcc 453
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 595 cagggttttgagaagatacatgggtccccggagtcatgggtcatctacaccaagcctgac 654
Query: 454 aacacagggaagcctgtgtgtcgggcctctgagagaaagcatccagcagtgaagaggtgg 513
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 655 aacacagggaagcctgtgtgtcaggcctgtgagagaaagcatccagcagtgaagaggtgg 714
Query: 514 ccagctccaag 524
|||||||||||
Sbjct: 715 ccagctccaag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_p05.g1 MSMg01no184_p05.g1 CHROMAT_FILE:
MSMg01no184_p05.g1 PHD_FILE: MSMg01no184_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:32 2005
(282 letters)
>mm_chr4_119816454_119817135
Length = 682
Score = 464 bits (240), Expect = e-135
Identities = 268/288 (93%), Gaps = 18/288 (6%)
Strand = Plus / Minus
Query: 4 ggaggcttgagggtacagaggtctaggtcaaaggttgaatgctactggaattgggtaaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggaggcttgagggtacagaggtctaggtcaaaggttgaatgctactggaattgggtaaag 274
Query: 64 aaagagccactctgctctgtgacttactttccctgattgtcaatattgtgctttccacaa 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 273 aaagagccactctgctctgtgacttactttccttgattgtcaatattgtgctttccacaa 214
Query: 124 ataatctccggtgtgtgtgtgtgtgtgtgtgtgctcactcgagcagtttatgcatggttc 183
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ataatctccg--------gtgtgtgtgtgtgtgctcactcgagcagtttatgcatggttc 162
Query: 184 ----------gtgtgtgtgtgtgtgtatgtatgtgcacatatgtgtatgcacatgtatgc 233
|||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 161 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgcacatatgtgtatgcacatgtatgc 102
Query: 234 atggtttatatatgtatatgtctctgtatgtgtgcacatatgtgtatg 281
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atggtttatatatgtatatgtctctgtatgtgtgcacatatgtgtatg 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
