Query= MSMg01no185_a22.b1 MSMg01no185_a22.b1 CHROMAT_FILE:
MSMg01no185_a22.b1 PHD_FILE: MSMg01no185_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:40 2005
(311 letters)
>mm_chr4_9262407_9263120
Length = 714
Score = 485 bits (251), Expect = e-141
Identities = 285/307 (92%), Gaps = 18/307 (5%)
Strand = Plus / Plus
Query: 5 gaattctttcattagacttgctttctggcactgtaactcggaaacagtgtactcagtgag 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctttcattagacttgctttctggcactgtaactcagaaacagtgtactcagtgag 264
Query: 65 ccacatcgctctgagtcttcgagctgtaaggtcacacgcatctcgagctgtcactgagga 124
|||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 265 ccacatcgctctgagtctgcgagcagtaaggtcacacgcatctcgagc------------ 312
Query: 125 gtgtgtcactgaggagtgtgtcactgaggaaggtgtcactgaggagt---gtgtcactga 181
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 313 ---tgtcactgaggagtgtgtcactgaggaaggtgtcactgaggagtgtggtgtcactga 369
Query: 182 ggagtggcagcagggagaaaatggcaacttagaaagcagcacacaagttgcattcattat 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggagtggcagcatggagaaaatggcaacttagaaagcagcacacaagttgcattcattat 429
Query: 242 gaagaccgtgaggctaggccatgatgtaagtatagtaatactctctgtggcttctctgtg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaagaccgtgaggctaggccatgatgtaagtatagtaatactctctgtggcttctctgtg 489
Query: 302 ctgtctc 308
|||||||
Sbjct: 490 ctgtctc 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 714
Length adjustment: 9
Effective length of query: 302
Effective length of database: 705
Effective search space: 212910
Effective search space used: 212910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_a22.g1 MSMg01no185_a22.g1 CHROMAT_FILE:
MSMg01no185_a22.g1 PHD_FILE: MSMg01no185_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:40 2005
(288 letters)
>mm_chr4_9363530_9364217
Length = 688
Score = 487 bits (252), Expect = e-142
Identities = 282/298 (94%), Gaps = 10/298 (3%)
Strand = Plus / Minus
Query: 1 ctagaaattactggagttgagtttgaatttttgtaaataactcttactaccttttgaaca 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctagaaattactggagtcgagtttgaatttttgtaaataactcttactaccttttgaaca 363
Query: 61 aaaatattagagcccagcaataaaaagcttggtgtatattttcatctaaacacacaccaa 120
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 362 aaaatactagagcccagcaataaaaagcttggtgtatattttaaactaaacacacaccaa 303
Query: 121 aagggagccatggcatgttatatgagtttggaacatcagcttagtgctaataaccaaaag 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagggagccatggcatgttatatcagtttggaacatcagcttagtgctaataaccaaaag 243
Query: 181 ggttacattcattatctacctcatgagtgaggcagctgtgtc----------atgtgtgt 230
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 242 ggttacattcattatctacctcatgagtgaggcagctgtgtcgtgtgtgtgtgtgtgtgt 183
Query: 231 gtgtgtgtgtgtgtgtgtgtgcactagttctaggctgacattaatctttctactccat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtgtgtgtgtgtgtgtgtgtgcactagttctaggctgacattaatctttctactccat 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
