BAC Information

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BAC

Clone NameMSMg01-185P23
Chromosome4 (Build37)
Map Location 32,028,367 - 32,185,198
singlet/doubletdoublet
Overlap geneMap3k7, LOC665218
Upstream geneLOC100040891
Downstream geneLOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P23.T7 (MSMg01no185_p23.b1)MSMg01-185P23.TJ (MSMg01no185_p23.g1)
ACCAG377818AG377819
length784748
length of high quality
(start - end)		320 (64 - 383)550 (92 - 641)
definitionCHROMAT_FILE: MSMg01no185_p23.b1 PHD_FILE: MSMg01no185_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:51 2005CHROMAT_FILE: MSMg01no185_p23.g1 PHD_FILE: MSMg01no185_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,028,367 - 32,028,678)(32,184,809 - 32,185,198)
sequence
NCCCATCGNNNNAACAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCCAAGTCAACATTATTCTAAAAACCATA
CCTAATAACATGGTTTAGAAGATTTCAAATTCAGTGTACAAAGGCATTTT
ATATGTCTATGTTTAATACATTGAAGTGCATACTGAAATGCATACATGAA
ATTTCCAGTTAAAATTTCGTCCAATTAAATAACTTGTAATTTTCTTATTG
GAAGAATCAGGGCTAGATAAAACAGATGACTCATATCAGTGGGTTAGTAG
TGGAGAGTAAGTTGTCATAAGAATAAAAACAAGCCAAGCTGCTTACACAG
AAGACCCAGACATGTCTGAGCATGTCTACTTTTTTTTTTCCCCTCCCCCC
CCCAAGTTCTATTTATAAAAGAGACCAAAGACACTCCCCCACAATTAATA
ATCATCAGACAGAGACTTTGAAAGCAACAGTTAAACCCATTGAACTGTAC
TGAGACAGGGCCAGTGCATAGTGGTGATTTGGACTGTGTTATTATCGCCC
CTTTTTATGATTTTAGCACCGCCTCCTTCTCCTTTTACTTTCCTTCCTCC
TCGTTTCCCTTTCTTCCTCCCATGATCCTAATTTACCTTTCTCTCCTCTT
TCTTATACCCTTTCCATTTTTGTATCCTCCCCAACCCCCATTTCCCCTCC
CTTTTTTACTTTCCCTCCTTCCTCTTTTTTCCCCATTCTCTTCTTTATTC
ACAATCCCCCTCTTTCAACCCTTTTTTTACCTTT

CCTCCTCCCNCNCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATCAT
GATAATCGACTAGCCATCTCGCTCTGCCTTGCTTTGTTTCCAATCCTCTG
GTGTGGCAATACATTTACCTGTGACAATAAATTTAAGTTATACTTAAAAT
TAAAATCAAGAATATAGTGTGCCTCGATGAAGTGAAGGTAGCAGATGAGG
GGAATGGGGATTAAAAGCAACCAGAATTCACATTTTTAAATTTAATTATT
TTTTCTCCAAAGTGTATATTTTAAATACTACACTGACTATGCTTCCCCCA
TATCTACTGCTATTTATACTCTATAAAATATTACATTTTAAAATTAAAGT
ATTTAAAAGACTCTACTATCTTCTAATTTTAGTTCCCCTTCTGGACAACT
TAGTCTTGTAGCTATAACGTCATGTGAAGTATCTAGCTTGAGTTCTTAAA
AAGGAGTGCTGGATGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAG
GCAGAGGGAGGCAAATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTG
AGTTCCAGGACAGCATAAGATTGATTTTTAATATATAAATTATTATAGTT
TATTTGCGTCCCCTCNCCCTACCCTATCATTACTATCTTTTTTCTTCTAT
CATCTTTCTTTTCCTTTTTTACTCTTCTTCTTATTTAATCTACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p23.b1 MSMg01no185_p23.b1 CHROMAT_FILE:
MSMg01no185_p23.b1 PHD_FILE: MSMg01no185_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
         (320 letters)



>mm_chr4_32028163_32028882
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtcaacattattctaaaaaccatacctaataacatggtttagaagatttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtcaacattattctaaaaaccatacctaataacatggtttagaagatttca 264

                                                                       
Query: 65  aattcagtgtacaaaggcattttatatgtctatgtttaatacattgaagtgcatactgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattcagtgtacaaaggcattttatatgtctatgtttaatacattgaagtgcatactgaa 324

                                                                       
Query: 125 atgcatacatgaaatttccagttaaaatttcgtccaattaaataacttgtaattttctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcatacatgaaatttccagttaaaatttcgtccaattaaataacttgtaattttctta 384

                                                                       
Query: 185 ttggaagaatcagggctagataaaacagatgactcatatcagtgggttagtagtggagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggaagaatcagggctagataaaacagatgactcatatcagtgggttagtagtggagag 444

                                                                       
Query: 245 taagttgtcataagaataaaaacaagccaagctgcttacacagaagacccagacatgtct 304
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 445 taagttgtcataagaataaaaacaagccaagctgcagacacagaagacccagacatgtct 504

                       
Query: 305 gagcatgtctac 316
           ||||||||||||
Sbjct: 505 gagcatgtctac 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_p23.g1 MSMg01no185_p23.g1 CHROMAT_FILE:
MSMg01no185_p23.g1 PHD_FILE: MSMg01no185_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
         (550 letters)



>mm_chr4_32184809_32185758
          Length = 950

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaatcatgataatcgactagccatctcgctctgccttgctttgtttccaatcctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 390 ctgaatcatgataatcgactagccatctcgctctgccttgctttgtttctaatcctctgg 331

                                                                       
Query: 61  tgtggcaatacatttacctgtgacaataaatttaagttatacttaaaattaaaatcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtggcaatacatttacctgtgacaataaatttaagttatacttaaaattaaaatcaaga 271

                                                                       
Query: 121 atatagtgtgcctcgatgaagtgaaggtagcagatgaggggaatggggattaaaagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atatagtgtgcctcgatgaagtgaaggtagcagatgaggggaatggggattaaaagcaac 211

                                                                       
Query: 181 cagaattcacatttttaaatttaattattttttctccaaagtgtatattttaaatactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cagaattcacatttttaaatttaattattttttctccaaagtgtatattttaaatactac 151

                                                                       
Query: 241 actgactatgcttcccccatatctactgctatttatactctataaaatattacattttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 actgactatgcttcccccatatctactgctatttatactctataaaatattacattttaa 91

                                                                       
Query: 301 aattaaagtatttaaaagactctactatcttctaattttagttccccttctggacaactt 360
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 90  aattaaagtatttaaaagactctactatcttctaattttagtttttcttctggacaactt 31

                                         
Query: 361 agtcttgtagctataacgtcatgtgaagta 390
           ||||||||||||||||||||||||||||||
Sbjct: 30  agtcttgtagctataacgtcatgtgaagta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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